[Home] | [Total List]

[187001_at]

Description Y71A12B.11 /REP_DB=WormBase Gene ID /WP=CE24598 /TR=Q9NEN0 /GB=CAB82002.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.9
(-3)
A 		9.2
(0.5)
A 		6.1
(-2.8)
A 		11.6
(3)
A 		6
B 6.4
(-2.8)
A 		13.4
(3)
A 		6.1
(-3)
A 		12.9
(2.6)
A 		7
C 7.9
(-0.5)
A 		5.5
(-3)
A 		7.2
(-1.2)
A 		11.2
(3)
A 		6
avr 6.7
(-2.8) 		9.4
(0.2) 		6.5
(-3) 		11.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 11.8
(-2.3)
A 		3.2
(-3)
A 		5.2
(-2.8)
A 		7.8
(-2.6)
A 		8.6
(-2.5)
A 		72.7
(3)
A 		70
B 8.3
(-2.9)
A 		8.3
(-2.9)
A 		5.7
(-3)
A 		6.2
(-3)
A 		8.4
(-2.9)
A 		130.5
(3)
A 		125
C 4.8
(-3)
A 		8.4
(-2.8)
A 		10.1
(-2.7)
A 		9.9
(-2.7)
A 		9.7
(-2.8)
A 		124.8
(3)
A 		120
avr 8.3
(-2.9) 		6.6
(-3) 		7
(-3) 		8
(-2.9) 		8.9
(-2.9) 		109.3
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.2
(3)
A 		2
(1)
A 		1.6
(-3)
A 		1.7
(-2)
A 		1
B 2
(-1.1)
A 		3.3
(3)
A 		1.4
(-3)
A 		2.7
(1.1)
A 		2
C 2.6
(3)
A 		1.6
(-3)
A 		2.5
(2.4)
A 		1.9
(-1.2)
A 		1
avr 2.3
(3) 		2.3
(3) 		1.8
(-3) 		2.1
(0.6) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 2.2
(-2.6)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2
(-2.7)
A 		2.6
(-2.5)
A 		17.7
(3)
A 		17
B 2.9
(-2.8)
A 		2.8
(-2.8)
A 		1.4
(-3)
A 		1.6
(-3)
A 		3.4
(-2.7)
A 		48.7
(3)
A 		47
C 1.8
(-3)
A 		2.5
(-2.9)
A 		2.6
(-2.9)
A 		2
(-3)
A 		3.1
(-2.8)
A 		41.8
(3)
A 		40
avr 2.3
(-2.9) 		2.1
(-2.9) 		1.7
(-3) 		1.9
(-3) 		3
(-2.8) 		36.1
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.713
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.11 NCBI
Target Description Y71A12B.11 /REP_DB=WormBase Gene ID /WP=CE24598 /TR=Q9NEN0 /GB=CAB82002.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061038 NCBI Caenorhabditis elegans Y71A12B.11 (Y71A12B.11) mRNA, complete cds. 11/11 None
SNAP00000038379 ENSEMBL cdna:SNAP chromosome:CEL140:I:13986343:13988165:1 11/11 None
GENEFINDER00000038405 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13986401:13988165:1 11/11 None
Y71A12B.11 ENSEMBL cdna:known chromosome:CEL140:I:13986548:13988241:1 gene:Y71A12B.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13986495-13988096(+) 95.93 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.11
Entrez Gene 173262 Entrez gene
SwissProt Q9NEN0 EMBL-EBI
WormBase CE24598 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82002 Hypothetical protein Y71A12B.11 [Caenorhabditis elegans] ref|NP_493439.1| Y71A12B.11 [Caenorhabditis elegans] 2.0E-70
blast CAB82002 Hypothetical protein Y71A12B.11 [Caenorhabditis elegans] ref|NP_493439.1| Y71A12B.11 [Caenorhabditis elegans] 6.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493439.1 1 268-285
Y71A12B.11 1 268-285
SNAP00000038379 1 267-284
GENEFINDER00000038405 2 10-32,306-323
Sequence
Target Sequence 
>C. ELEGANS:187001_AT
gatccacaggagcttgctggtaccaataaggaagttacagtggatgatgccttgaagtcg
cccgaagcatctgatgattcggagtcagatgcatccgacgaatcagagtcagaatctgaa
tccgaggatgaatcggagtcggagggttttgacgaatctgaagatgaagaggaagtacca
aaggagacgggtacatatgcctttgaatcaaagcccgaagctttagatgattcggagtca
gaagcctccgacgtatcagaatctaaagatgaatcggagtcagagggttccgacgattct
gaagacgaagagtatgtagaagagacgtgtacagatgccttgaatcaattggaaccagag
tccgatgcggctgatgaatcggtggaagaagaggaggaggaagacgaggattccgatgat
tccgatgattccgatgactccgaagaagaggaagcagaaggatcaaccgcccaagctcca
gcagaaaaagcaaattcgagcacaaccacgaccgaccagaacataggagagctaagcgac
atggaagtcgcgggacttgtgctctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCACAGGAGCTTGCTGGTACCA 280 415 271 Antisense
AGTGGATGATGCCTTGAAGTCGCCC 404 59 309 Antisense
AAGTCGCCCGAAGCATCTGATGATT 128 157 325 Antisense
GAGTCAGATGCATCCGACGAATCAG 530 399 352 Antisense
GACGGGTACATATGCCTTTGAATCA 479 375 456 Antisense
GAAGCCTCCGACGTATCAGAATCTA 370 345 511 Antisense
GAGTCAGAGGGTTCCGACGATTCTG 652 399 547 Antisense
GGAACCAGAGTCCGATGCGGCTGAT 13 531 621 Antisense
GACGAGGATTCCGATGATTCCGATG 440 379 673 Antisense
CAACCACGACCGACCAGAACATAGG 146 179 773 Antisense
GGAAGTCGCGGGACTTGTGCTCTTA 679 531 813 Antisense
Sequence Source Affymetrix Proprietary Database