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[187000_s_at]

Description Y57A10A.27 /REP_DB=WormBase Gene ID /WP=CE25507 /TR=Q9U210 /GB=CAB60768.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 82      6grp_total > 89      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 552
1 2 3 4 range
A 768.7
(3)
P 		724.5
(2.2)
P 		671.1
(1.3)
P 		415.3
(-3)
P 		353
B 786.9
(1.9)
P 		653.2
(0.4)
P 		888.4
(3)
P 		336.3
(-3)
P 		552
C 654.2
(2.1)
P 		675.9
(2.5)
P 		703.4
(3)
P 		384.4
(-3)
P 		319
avr 736.6
(2.7) 		684.5
(1.9) 		754.3
(3) 		378.7
(-3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 354.1
(-0.8)
P 		411.5
(1.5)
P 		310.9
(-2.5)
P 		297.5
(-3)
P 		360
(-0.5)
P 		449.9
(3)
P 		152
B 290.1
(-3)
P 		349
(-0.5)
P 		293.6
(-2.9)
P 		293.9
(-2.8)
P 		406.7
(2)
P 		430.3
(3)
P 		140
C 447.9
(2.9)
P 		270.5
(-3)
P 		355.1
(-0.2)
P 		299.9
(-2)
P 		450
(3)
P 		420.6
(2)
P 		180
avr 364
(-0.1) 		343.7
(-1) 		319.9
(-2) 		297.1
(-3) 		405.6
(1.8) 		433.6
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 279.9
(3)
P 		157.3
(-0.4)
P 		175.4
(0.1)
P 		60.8
(-3)
P 		219
B 250.9
(3)
P 		161.3
(0)
P 		205.9
(1.5)
P 		71.7
(-3)
P 		179
C 216.6
(2)
P 		194.3
(1.3)
P 		245.2
(3)
P 		64.8
(-3)
P 		180
avr 249.1
(3) 		171
(0.4) 		208.8
(1.7) 		65.8
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 65.3
(-3)
P 		146.4
(3)
P 		67.7
(-2.8)
P 		75.5
(-2.2)
P 		108.6
(0.2)
P 		109.5
(0.3)
P 		81
B 100.9
(-1.1)
P 		116.2
(-0.1)
P 		71.3
(-3)
P 		77.8
(-2.6)
P 		165.2
(3)
P 		160.5
(2.7)
P 		94
C 166
(3)
P 		82.5
(-1.7)
P 		90.4
(-1.3)
P 		60.3
(-3)
P 		145.6
(1.8)
P 		140.8
(1.6)
P 		106
avr 110.7
(0.5) 		115
(0.8) 		76.5
(-2.5) 		71.2
(-3) 		139.8
(3) 		136.9
(2.7) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187000_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3705
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.27 NCBI
Target Description Y57A10A.27 /REP_DB=WormBase Gene ID /WP=CE25507 /TR=Q9U210 /GB=CAB60768.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064204 NCBI Caenorhabditis elegans Y57A10A.27 (Y57A10A.27) mRNA, complete cds. 11/11 None
SNAP00000026035 ENSEMBL cdna:SNAP chromosome:CEL140:II:12269902:12279282:-1 11/11 None
GENEFINDER00000026060 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12269902:12274946:-1 10/11 None
Y57A10A.27 ENSEMBL cdna:known chromosome:CEL140:II:12269724:12274947:-1 gene:Y57A10A.27 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12269898-12274943(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.27
Entrez Gene 174869 Entrez gene
SwissProt Q9U210 EMBL-EBI
WormBase CE25507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60768 Hypothetical protein Y57A10A.27 [Caenorhabditis elegans] ref|NP_496605.1| Y57A10A.27 [Caenorhabditis elegans] 0.0
blast T31649 hypothetical protein Y57A10A.bb - Caenorhabditis elegans 0.0
blast CAB60768 Hypothetical protein Y57A10A.27 [Caenorhabditis elegans] ref|NP_496605.1| Y57A10A.27 [Caenorhabditis elegans] 1.0E-154
blast CAB55033 Hypothetical protein Y57A10A.28 [Caenorhabditis elegans] ref|NP_496606.2| Y57A10A.28 [Caenorhabditis elegans] 1.0E-146
blast CAE73478 Hypothetical protein CBG20930 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR007866 EMBL-EBI Protein of unknown function DUF714 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000026035 2 60-82,95-117
Sequence
Target Sequence 
>C. ELEGANS:187000_S_AT
cggatgacgtggattcggagcccgagacgcttcatgtggtgctcaaagcgattgccacgt
cgagagtgctctcttttcgaaatgaggacggttttttgagaatgtgcattgagaagctga
agagcaatacggaaattgtggagcatgtgctcgccgatggagcacgtgttgtgtcggaat
ttattttggctgaattgttgaagcttgctgctggaaaaccgtccgaatccgagcgccgag
cccaagtgagccaagttcttgcccgtaacttctctaaaattccaatgaccgaagcttgcg
gagccgtgctctccgtcaccgaatccatcgaaattatgacaattctcactgaaatctacc
gtgaatcaccggatatttccatcagttcaaaagctctcacactgattactgtacttatgg
atgcacatggttcacgtattgtatatgaggataaacttcatcacaaattcgctgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATGACGTGGATTCGGAGCCCGA 414 243 560 Antisense
AAGCGATTGCCACGTCGAGAGTGCT 140 149 605 Antisense
CTCGCCGATGGAGCACGTGTTGTGT 305 233 709 Antisense
GCTGGAAAACCGTCCGAATCCGAGC 81 293 769 Antisense
AAGTGAGCCAAGTTCTTGCCCGTAA 335 159 803 Antisense
TGCCCGTAACTTCTCTAAAATTCCA 282 561 819 Antisense
ATGACCGAAGCTTGCGGAGCCGTGC 632 43 844 Antisense
CTCCGTCACCGAATCCATCGAAATT 371 235 870 Antisense
GAATCACCGGATATTTCCATCAGTT 172 327 922 Antisense
AAAAGCTCTCACACTGATTACTGTA 106 131 948 Antisense
AAACTTCATCACAAATTCGCTGCGA 21 129 1012 Antisense
Sequence Source Affymetrix Proprietary Database