[Home] | [Total List]

[186998_at]

Description C35A5.5 /REP_DB=WormBase Gene ID /WP=CE05363 /TR=SW:Q18473 /GB=CAA94907.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 25.3
(-3)
A 		155.7
(3)
P 		84.3
(-0.3)
P 		49.8
(-1.9)
A 		130
B 17.8
(-3)
A 		136.9
(3)
P 		73.2
(-0.2)
P 		42.8
(-1.7)
P 		119
C 1.8
(-3)
A 		134.4
(3)
P 		120.1
(2.4)
P 		54.7
(-0.6)
P 		133
avr 15
(-3) 		142.3
(3) 		92.5
(0.7) 		49.1
(-1.4) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 68.9
(-0.9)
P 		160.1
(3)
P 		116.6
(1.1)
P 		95
(0.2)
P 		20.6
(-3)
A 		43.2
(-2)
A 		140
B 65
(-1.5)
P 		200
(3)
P 		83.1
(-0.9)
P 		67.2
(-1.4)
P 		41.8
(-2.2)
P 		18.7
(-3)
A 		181
C 83.3
(-1.1)
P 		205.1
(3)
P 		78.6
(-1.3)
M 		97.4
(-0.6)
M 		26.8
(-3)
P 		31.6
(-2.8)
A 		178
avr 72.4
(-1.4) 		188.4
(3) 		92.8
(-0.6) 		86.5
(-0.9) 		29.7
(-3) 		31.2
(-2.9) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 9.2
(-2.6)
A 		33.8
(3)
P 		22
(0.3)
P 		7.3
(-3)
A 		27
B 5.7
(-3)
A 		33.8
(3)
P 		17
(-0.6)
P 		9.1
(-2.3)
P 		28
C 0.6
(-3)
A 		38.6
(2.5)
P 		41.9
(3)
P 		9.2
(-1.8)
P 		41
avr 5.2
(-3) 		35.4
(3) 		27
(1.3) 		8.5
(-2.3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 12.7
(-2.2)
P 		56.9
(3)
P 		25.4
(-0.7)
P 		24.1
(-0.9)
P 		6.2
(-3)
A 		10.5
(-2.5)
A 		51
B 22.6
(-1.4)
P 		66.6
(3)
P 		20.2
(-1.7)
P 		17.8
(-1.9)
P 		17
(-2)
P 		7
(-3)
A 		60
C 30.9
(-0.5)
P 		62.6
(3)
P 		20
(-1.7)
M 		19.6
(-1.8)
M 		8.7
(-3)
P 		10.6
(-2.8)
A 		54
avr 22.1
(-1.6) 		62
(3) 		21.9
(-1.6) 		20.5
(-1.7) 		10.6
(-2.9) 		9.4
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11708
Sequence Type Exemplar sequence
Representative Public ID C35A5.5 NCBI
Target Description C35A5.5 /REP_DB=WormBase Gene ID /WP=CE05363 /TR=SW:Q18473 /GB=CAA94907.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073294 NCBI Caenorhabditis elegans C35A5.5 (C35A5.5) mRNA, complete cds. 11/11 None
SNAP00000025027 ENSEMBL cdna:SNAP chromosome:CEL140:V:10508779:10510411:1 11/11 None
GENEFINDER00000025039 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10508494:10510411:1 11/11 None
C35A5.5 ENSEMBL cdna:known chromosome:CEL140:V:10508494:10510411:1 gene:C35A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10507092-10510411(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35A5.5
Entrez Gene 183223 Entrez gene
SwissProt Q18473 EMBL-EBI
WormBase CE37810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94907 Hypothetical protein C35A5.5 [Caenorhabditis elegans] ref|NP_505695.2| C35A5.5 [Caenorhabditis elegans] sp|Q18473|YE15_CAEEL Hypothetical protein C35A5.5 in chromosome V 0.0
blast CAE61109 Hypothetical protein CBG04866 [Caenorhabditis briggsae] 1.0E-177
blast CAE74290 Hypothetical protein CBG21991 [Caenorhabditis briggsae] 1.0E-158
blast CAE61109 Hypothetical protein CBG04866 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505695.2 1 23-45
C35A5.5 1 23-45
GENEFINDER00000025039 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:186998_AT
gagttgtttggtcacacttggtttgtgaatgaagaagattacggaaaagttatgacaaaa
cctggaaatttgaattcaatgtggattcacgaatcatggaatattccaacaaatcggcat
catgttagtaaaagcaattacataattcatatgcagaaaccagttgatccagatggaact
gatccagtttcctatcgaatgagcaattttgaaatgttggagagcatgcaactgaatgct
tctactttgatacccattcaggatgacttggaaagagtactcaaatcatcgaatatttct
atgaccgctgaagatctaccaaataaaacatactacttcccaattatttaccgatgttat
tatgaaaaattttacaaaaaaccaaagaaagactcatgtccaaatggagagggatgcttg
attccacaacgaaccggtacaaattgtattcactcagacgctgatttcaaatcaggtcca
gaaatgtggccaattacatatcattatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTGTTTGGTCACACTTGGTTTG 450 397 1819 Antisense
AACTGATCCAGTTTCCTATCGAATG 396 143 1995 Antisense
CTGAATGCTTCTACTTTGATACCCA 670 237 2050 Antisense
GATACCCATTCAGGATGACTTGGAA 59 423 2067 Antisense
CATCGAATATTTCTATGACCGCTGA 196 211 2105 Antisense
ATGACCGCTGAAGATCTACCAAATA 493 43 2119 Antisense
ACTACTTCCCAATTATTTACCGATG 146 101 2150 Antisense
GGAGAGGGATGCTTGATTCCACAAC 325 519 2224 Antisense
GATTCCACAACGAACCGGTACAAAT 240 425 2238 Antisense
AATTGTATTCACTCAGACGCTGATT 496 179 2260 Antisense
GTGGCCAATTACATATCATTATCAT 302 493 2304 Antisense
Sequence Source Affymetrix Proprietary Database