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[186996_at]

Description Y73C8C.10 /REP_DB=WormBase Gene ID /WP=CE20366 /TR=Q9TXX0 /GB=AAC69350.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 46.7
(-1.4)
A 		53.9
(-1.1)
A 		16.2
(-3)
A 		132.4
(3)
A 		116
B 37.1
(-3)
A 		79.2
(3)
A 		47.5
(-1.5)
A 		70.7
(1.8)
A 		42
C 65.2
(-2.2)
A 		126.9
(3)
A 		55.4
(-3)
A 		79.9
(-0.9)
A 		72
avr 49.7
(-1.9) 		86.7
(2.2) 		39.7
(-3) 		94.3
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 10.7
(-2.1)
A 		42.1
(3)
A 		5.3
(-3)
A 		14.5
(-1.5)
A 		16.7
(-1.1)
A 		12.7
(-1.8)
A 		37
B 12.2
(-2.3)
A 		42.1
(3)
A 		33.9
(1.5)
A 		8.2
(-3)
A 		21.7
(-0.6)
A 		17.6
(-1.3)
A 		34
C 37.1
(1.7)
A 		6.8
(-3)
A 		15
(-1.7)
A 		25.6
(-0.1)
A 		26
(-0)
A 		45.3
(3)
A 		39
avr 20
(-1.4) 		30.3
(3) 		18.1
(-2.2) 		16.1
(-3) 		21.5
(-0.7) 		25.2
(0.8) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 17
(2.1)
A 		11.7
(-0)
A 		4.2
(-3)
A 		19.4
(3)
A 		15
B 11.8
(-2.4)
A 		19.6
(3)
A 		11
(-3)
A 		15.1
(-0.1)
A 		9
C 21.6
(-0.9)
A 		36.5
(3)
A 		19.3
(-1.5)
A 		13.5
(-3)
A 		23
avr 16.8
(-0.1) 		22.6
(3) 		11.5
(-3) 		16
(-0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-2.7)
A 		15
(3)
A 		1.2
(-3)
A 		3.7
(-1.9)
A 		5
(-1.3)
A 		3.1
(-2.2)
A 		14
B 4.2
(-2)
A 		14
(3)
A 		8.2
(0.1)
A 		2.2
(-3)
A 		8.8
(0.4)
A 		6.6
(-0.8)
A 		12
C 13.8
(2.4)
A 		2.1
(-3)
A 		3.8
(-2.2)
A 		5.1
(-1.6)
A 		8.4
(-0.1)
A 		15.2
(3)
A 		13
avr 6.7
(-0.3) 		10.4
(3) 		4.4
(-2.4) 		3.7
(-3) 		7.4
(0.3) 		8.3
(1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15559
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.10 NCBI
Target Description Y73C8C.10 /REP_DB=WormBase Gene ID /WP=CE20366 /TR=Q9TXX0 /GB=AAC69350.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071456(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071456 NCBI Caenorhabditis elegans Y73C8C.10 (Y73C8C.10) mRNA, complete cds. 10/11 None
SNAP00000003108 ENSEMBL cdna:SNAP chromosome:CEL140:V:3125388:3127597:-1 10/11 None
GENEFINDER00000003116 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3125388:3127597:-1 10/11 None
Y73C8C.10 ENSEMBL cdna:known chromosome:CEL140:V:3125393:3127597:-1 gene:Y73C8C.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3125387-3127597(-) 98.17 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8C.10
Entrez Gene 190664 Entrez gene
SwissProt Q9TXX0 EMBL-EBI
WormBase CE36050 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69350 Hypothetical protein Y73C8C.10 [Caenorhabditis elegans] ref|NP_503857.2| Y73C8C.10 [Caenorhabditis elegans] 0.0
blast AAC19231 Hypothetical protein T10B5.8 [Caenorhabditis elegans] ref|NP_503516.1| T10B5.8 [Caenorhabditis elegans] 0.0
blast AAB65282 Hypothetical protein F17A9.5 [Caenorhabditis elegans] ref|NP_504579.1| F17A9.5 [Caenorhabditis elegans] 0.0
blast AAC19231 Hypothetical protein T10B5.8 [Caenorhabditis elegans] ref|NP_503516.1| T10B5.8 [Caenorhabditis elegans] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR001155 EMBL-EBI NADH:flavin oxidoreductase/NADH oxidase 2.3E-41
Sequence
Target Sequence 
>C. ELEGANS:186996_AT
gaggcgtttttcgttgagtttgcggaacagaagattctaaacttttccaaactttccaag
ctatttttgagtttcaatatgtttcttgaacttttcaaagttcttcagattcgcccggtt
ttcaacaagacagttgtctacctaaccggaggatttcgtacggcacctgcgatgattgat
gctatcaaatccaatgctacccagggaatcggactggggcgtccaatcacagccgagcca
gatttgccaaagaaaattctagaaggcgatgtcacttctgccatacaggatcacttaccg
gacttgcaagctgctctcagatggagcagatgggcagaacaagcctggagaaagctagtg
ggaagtaagcttttaggattaatctactattttagccaagatgagactgtagcccgtttt
gga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCGTTTTTCGTTGAGTTTGCGG 218 381 925 Antisense
TTCAGATTCGCCCGGTTTTCAACAA 55 685 1028 Antisense
GACAGTTGTCTACCTAACCGGAGGA 574 339 1053 Antisense
ATTTCGTACGGCACCTGCGATGATT 358 17 1077 Antisense
TGCTATCAAATCCAATGCTACCCAG 618 579 1104 Antisense
GAATCGGACTGGGGCGTCCAATCAC 192 325 1130 Antisense
TCACAGCCGAGCCAGATTTGCCAAA 441 627 1151 Antisense
GATGTCACTTCTGCCATACAGGATC 546 409 1192 Antisense
TACAGGATCACTTACCGGACTTGCA 99 645 1208 Antisense
GACTTGCAAGCTGCTCTCAGATGGA 341 371 1225 Antisense
AGATGAGACTGTAGCCCGTTTTGGA 683 67 1323 Antisense
Sequence Source Affymetrix Proprietary Database