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[186993_at]

Description Y57G11C.27 /REP_DB=WormBase Gene ID /WP=CE14980 /TR=O18252 /GB=CAB16529.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 10      6grp_cgc > 42      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 1.8
(-3)
A 		36.6
(0.2)
A 		5.4
(-2.7)
A 		67.5
(3)
A 		66
B 18.9
(-1)
A 		4.6
(-3)
A 		16.4
(-1.3)
A 		46.9
(3)
A 		42
C 8.1
(-2.6)
A 		12.3
(-2.2)
A 		3.7
(-3)
A 		68.7
(3)
A 		65
avr 9.6
(-2.9) 		17.8
(-1.9) 		8.5
(-3) 		61
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 56.4
(3)
M 		5.8
(-2.7)
A 		42.7
(1.4)
P 		3.5
(-3)
A 		9.4
(-2.3)
A 		6.5
(-2.7)
A 		53
B 4
(-2.7)
A 		4.2
(-2.6)
A 		13
(-1)
A 		6.6
(-2.2)
A 		35.4
(3)
P 		2.1
(-3)
A 		33
C 21
(-0.8)
A 		55.1
(3)
P 		4.3
(-2.7)
A 		1.8
(-3)
A 		23.3
(-0.6)
A 		14.3
(-1.6)
A 		53
avr 27.1
(3) 		21.7
(1.6) 		20
(1.2) 		4
(-3) 		22.7
(1.9) 		7.6
(-2.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.6
(-3)
A 		8
(1.8)
A 		1.4
(-2.5)
A 		9.9
(3)
A 		9
B 6
(0.3)
A 		1.1
(-3)
A 		3.8
(-1.2)
A 		10
(3)
A 		9
C 2.7
(-2.2)
A 		3.5
(-1.7)
A 		1.3
(-3)
A 		11.6
(3)
A 		10
avr 3.1
(-2.3) 		4.2
(-1.6) 		2.2
(-3) 		10.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.4
(3)
M 		2.1
(-2.2)
A 		9.3
(2.3)
P 		0.9
(-3)
A 		2.8
(-1.8)
A 		1.6
(-2.6)
A 		10
B 1.4
(-2.7)
A 		1.4
(-2.7)
A 		3.2
(-1.9)
A 		1.7
(-2.6)
A 		14.4
(3)
P 		0.8
(-3)
A 		14
C 7.8
(-0.3)
A 		16.8
(3)
P 		1.1
(-2.7)
A 		0.4
(-3)
A 		7.5
(-0.4)
A 		4.8
(-1.4)
A 		16
avr 6.5
(1.6) 		6.8
(1.8) 		4.5
(-0.1) 		1
(-3) 		8.2
(3) 		2.4
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8473
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.27 NCBI
Target Description Y57G11C.27 /REP_DB=WormBase Gene ID /WP=CE14980 /TR=O18252 /GB=CAB16529.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003607 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14921295:14922749:-1 10/11 None
Y57G11C.27 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:14921055:14922749:-1 gene:Y57G11C.27 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003592 3/11 Cross Hyb Matching Probes None
Y57G11C.26 3/11 Cross Hyb Matching Probes None
Y57G11C.29 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14921060-14922755(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11C.27
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27240 hypothetical protein Y57G11C.27 - Caenorhabditis elegans 3.0E-99
blast T23774 hypothetical protein M162.4 - Caenorhabditis elegans 8.0E-82
blast CAB05255 Hypothetical protein M162.3 [Caenorhabditis elegans] ref|NP_507834.1| Serpentine Receptor, class T family member (srt-45) [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.7E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003607 4 41-63,70-92,97-119,140-162
Sequence
Target Sequence 
>C. ELEGANS:186993_AT
ggccctaattgacatgagtgcaacctgctgtagttgtctgataactgggccgatgctaat
cgtgggggctgtgttctgcatgtatccgacgtttacatatgtggctggaggatttgtgtt
aaacacttggtgcatggcctgtgcaacaacaatttctctatttctgaaccgagttataag
cattggatgtcgaaagtatgcagatgaaatcgaaaagaaaattgcatatatttcaaagtt
tcttgtggtttcatatggatctttcgtgttttggtttactccatcactcatattcaattc
agttttcatgtgttggattgcagatccattgtcagaaactgtgcccatatcgcatttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCCTAATTGACATGAGTGCAACC 502 501 237 Antisense
GAGTGCAACCTGCTGTAGTTGTCTG 329 401 252 Antisense
GTTGTCTGATAACTGGGCCGATGCT 396 437 269 Antisense
CTAATCGTGGGGGCTGTGTTCTGCA 65 227 292 Antisense
GTATCCGACGTTTACATATGTGGCT 511 455 318 Antisense
TAAACACTTGGTGCATGGCCTGTGC 201 641 356 Antisense
ACAATTTCTCTATTTCTGAACCGAG 549 113 385 Antisense
GTTTCTTGTGGTTTCATATGGATCT 58 451 474 Antisense
TTCGTGTTTTGGTTTACTCCATCAC 330 693 499 Antisense
TACTCCATCACTCATATTCAATTCA 442 647 513 Antisense
GAAACTGTGCCCATATCGCATTTAA 293 357 571 Antisense
Sequence Source Affymetrix Proprietary Database