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[186991_at]

Description Y105C5B.14 /REP_DB=WormBase Gene ID /WP=CE24063 /TR=Q9U310 /GB=CAB60318.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 3.4
(-3)
A 		5.5
(-1.9)
A 		9.8
(0.3)
A 		14.9
(3)
A 		12
B 5.3
(-2.8)
A 		4.9
(-2.8)
A 		2.9
(-3)
A 		71
(3)
A 		68
C 3.9
(-3)
A 		7.5
(-2.4)
A 		8.6
(-2.3)
A 		42.4
(3)
A 		39
avr 4.2
(-3) 		6
(-2.7) 		7.1
(-2.5) 		42.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 14.2
(-1.1)
A 		4.3
(-3)
A 		35.4
(3)
A 		5.5
(-2.8)
A 		5.1
(-2.8)
A 		8
(-2.3)
A 		31
B 4.2
(-2.8)
A 		10.7
(-0.8)
A 		22.9
(3)
A 		5.2
(-2.4)
A 		3.4
(-3)
A 		8.2
(-1.5)
A 		20
C 3.4
(-3)
A 		9.7
(-0.9)
A 		4.3
(-2.7)
A 		4.3
(-2.7)
A 		4
(-2.8)
A 		21.6
(3)
A 		18
avr 7.3
(-1.9) 		8.2
(-1.6) 		20.9
(3) 		5
(-2.7) 		4.2
(-3) 		12.6
(0) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-3)
A 		1.2
(-3)
A 		2.6
(3)
A 		2.2
(1.3)
A 		1
B 1.7
(-2.6)
A 		1.2
(-2.8)
A 		0.7
(-3)
A 		15.1
(3)
A 		14
C 1.3
(-3)
A 		2.1
(-2.2)
A 		3
(-1.3)
A 		7.2
(3)
A 		6
avr 1.4
(-3) 		1.5
(-2.9) 		2.1
(-2.4) 		8.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.6
(-1.9)
A 		1.5
(-2.9)
A 		7.7
(3)
A 		1.4
(-3)
A 		1.6
(-2.8)
A 		2
(-2.4)
A 		6
B 1.4
(-3)
A 		3.6
(0.1)
A 		5.6
(3)
A 		1.4
(-3)
A 		1.4
(-3)
A 		3.1
(-0.6)
A 		4
C 1.3
(-2.6)
A 		3
(-1)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		1.3
(-2.6)
A 		7.2
(3)
A 		6
avr 1.8
(-2) 		2.7
(-0.5) 		4.8
(3) 		1.2
(-3) 		1.4
(-2.7) 		4.1
(1.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9978
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.14 NCBI
Target Description Y105C5B.14 /REP_DB=WormBase Gene ID /WP=CE24063 /TR=Q9U310 /GB=CAB60318.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070502 NCBI Caenorhabditis elegans Y105C5B.14 (Y105C5B.14) mRNA, complete cds. 11/11 None
Y105C5B.14 ENSEMBL cdna:known chromosome:CEL140:IV:15949687:15950823:-1 gene:Y105C5B.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018398 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15949692-15950829(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.14
Entrez Gene 190894 Entrez gene
SwissProt Q9U310 EMBL-EBI
WormBase CE24063 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60318 Hypothetical protein Y105C5B.14 [Caenorhabditis elegans] ref|NP_502903.1| Y105C5B.14 [Caenorhabditis elegans] 1.0E-121
blast T26387 hypothetical protein Y105C5B.k - Caenorhabditis elegans 1.0E-121
blast CAB04067 Hypothetical protein F09C6.1 [Caenorhabditis elegans] ref|NP_507266.1| F09C6.1 [Caenorhabditis elegans] 3.0E-38
Sequence
Target Sequence 
>C. ELEGANS:186991_AT
acacatgatcgactgcacaactttcaaataaccgtcgacactgactatcggaactttgtt
caactagtcaacacgatgagatcacctaacattgcacaacaagaccgggcttttctacaa
ttacaacagctaggattacagcacccggactacattcgaaaagcccgagtcccagaaacc
atgcggcagttcgcagaaggtgccgccggaaaacggaggatacgttcgtgtcatggaaca
tatcttcattggtatgacgaaggattgaaggttgacatgaagtcgggcgaagcggggaca
tgtgaaaattggattattgaggactggaacgagaaagtggttttcagggcagttgatcca
cggggcaaatatctaagagcttgcctggggagcaaccagctgactctagtatacattcct
gagccaacggaactgtggagcccattcgaaaatggcaacgggacctggtcgtttctcagt
tctaacggaacatggctcagtgctcacgaagatgggcaagtgtgcactgtgaaggaccgt
caagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACATGATCGACTGCACAACTTTC 495 109 52 Antisense
ATAACCGTCGACACTGACTATCGGA 246 25 79 Antisense
GCACAACAAGACCGGGCTTTTCTAC 539 313 145 Antisense
TTACAGCACCCGGACTACATTCGAA 512 679 187 Antisense
CCGAGTCCCAGAAACCATGCGGCAG 162 263 216 Antisense
GGTTTTCAGGGCAGTTGATCCACGG 33 489 390 Antisense
GAGCTTGCCTGGGGAGCAACCAGCT 95 389 428 Antisense
GAGCCAACGGAACTGTGGAGCCCAT 138 385 472 Antisense
CAACGGGACCTGGTCGTTTCTCAGT 503 185 507 Antisense
GAACATGGCTCAGTGCTCACGAAGA 497 349 539 Antisense
GTGCACTGTGAAGGACCGTCAAGCG 29 481 573 Antisense
Sequence Source Affymetrix Proprietary Database