[Home] | [Total List]

[186990_s_at]

Description T09A5.5 /REP_DB=WormBase Gene ID /WP=CE01086 /TR=SW:P45965 /GB=CAA85333.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 66      6grp_total > 64      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 753
1 2 3 4 range
A 1558.1
(2.6)
P 		1466.6
(1.2)
P 		1585.1
(3)
P 		1193.8
(-3)
P 		391
B 1457.7
(-0.8)
P 		1561
(0.1)
P 		1887
(3)
P 		1209
(-3)
P 		678
C 1632.3
(2.5)
P 		1359.9
(-0.5)
P 		1676.1
(3)
P 		1134.5
(-3)
P 		542
avr 1549.4
(1.1) 		1462.5
(0.2) 		1716.1
(3) 		1179.1
(-3) 		537

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 896
1 2 3 4 5 6 range
A 1372
(-0.2)
P 		1265.7
(-1.1)
P 		1739.3
(3)
P 		1428.3
(0.3)
P 		1051.9
(-3)
P 		1060.1
(-2.9)
P 		687
B 1070.4
(-2.4)
P 		1209.4
(-1.3)
P 		1745.2
(3)
P 		1373.8
(0)
P 		993.7
(-3)
P 		1409.4
(0.3)
P 		752
C 1117.5
(-0.9)
P 		1355.7
(0.9)
P 		1370.3
(1.1)
P 		1620.7
(3)
P 		848.8
(-3)
P 		1583.5
(2.7)
P 		772
avr 1186.6
(-1) 		1276.9
(-0.1) 		1618.3
(3) 		1474.3
(1.7) 		964.8
(-3) 		1351
(0.5) 		654
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 567.3
(3)
P 		318.4
(-0.8)
P 		414.4
(0.7)
P 		174.8
(-3)
P 		393
B 464.8
(3)
P 		385.5
(0.7)
P 		437.3
(2.2)
P 		257.6
(-3)
P 		207
C 540.3
(2.3)
P 		391
(0)
P 		584.2
(3)
P 		191.3
(-3)
P 		393
avr 524.1
(3) 		365
(-0) 		478.6
(2.1) 		207.9
(-3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 252.9
(-3)
P 		450.1
(3)
P 		378.8
(0.8)
P 		362.2
(0.3)
P 		317.4
(-1)
P 		258.1
(-2.8)
P 		197
B 372.4
(-2.7)
P 		402.5
(-1.6)
P 		423.8
(-0.8)
P 		363.9
(-3)
P 		403.7
(-1.5)
P 		525.6
(3)
P 		162
C 414.2
(0.3)
P 		413.7
(0.3)
P 		348.8
(-1.3)
P 		325.9
(-1.8)
P 		274.7
(-3)
P 		530.1
(3)
P 		255
avr 346.5
(-2.2) 		422.1
(2.1) 		383.8
(-0.1) 		350.7
(-1.9) 		331.9
(-3) 		437.9
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186990_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5822
Sequence Type Exemplar sequence
Representative Public ID T09A5.5 NCBI
Target Description T09A5.5 /REP_DB=WormBase Gene ID /WP=CE01086 /TR=SW:P45965 /GB=CAA85333.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063248 NCBI Caenorhabditis elegans T09A5.5 (T09A5.5) mRNA, complete cds. 11/11 None
SNAP00000029435 ENSEMBL cdna:SNAP chromosome:CEL140:II:7852856:7853700:-1 11/11 None
GENEFINDER00000029444 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7852856:7853700:-1 11/11 None
T09A5.5.1 ENSEMBL cdna:known chromosome:CEL140:II:7852777:7853700:-1 gene:T09A5.5 11/11 None
T09A5.5.2 ENSEMBL cdna:known chromosome:CEL140:II:7852825:7853702:-1 gene:T09A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7852852-7853673(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09A5.5
Entrez Gene 174263 Entrez gene
SwissProt P45965 EMBL-EBI
WormBase CE01086 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85333 Hypothetical protein T09A5.5 [Caenorhabditis elegans] ref|NP_495649.1| T09A5.5 [Caenorhabditis elegans] sp|P45965|YNZ5_CAEEL Hypothetical protein T09A5.5 in chromosome III 1.0E-94
blast CAE59837 Hypothetical protein CBG03309 [Caenorhabditis briggsae] 1.0E-89
Sequence
Target Sequence 
>C. ELEGANS:186990_S_AT
ggcttcacagccaaaatcattcgattcgtgccgcattttgtagctctccgactcagttgg
acacacaatgatcttaaagccgagggacttgaacagtttgttgaggagtgtcttccagcc
atacgcgagaataatccacaagtgaaatatttccttcagcgatcatatacaacttgtgat
ccatttgtagttggagaatacagctggttgcgtcatcgtaagaagcgtgtaaactggaag
tccaaggagcaggtgctgtctatgatcgaagaaatgtcgattggaggagattaccgagaa
ggatataaacgaggagtcaatcgtcgtctaccacgtggtcaagaactttgggatacggaa
acaatgggtcacgatgtgttccatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTCACAGCCAAAATCATTCGAT 439 537 28 Antisense
GATTCGTGCCGCATTTTGTAGCTCT 382 433 50 Antisense
TAGCTCTCCGACTCAGTTGGACACA 268 649 68 Antisense
GTTGAGGAGTGTCTTCCAGCCATAC 574 437 127 Antisense
CCAGCCATACGCGAGAATAATCCAC 298 273 142 Antisense
ATTTCCTTCAGCGATCATATACAAC 348 17 176 Antisense
ATACAGCTGGTTGCGTCATCGTAAG 502 23 225 Antisense
GAGCAGGTGCTGTCTATGATCGAAG 480 389 274 Antisense
ACGAGGAGTCAATCGTCGTCTACCA 490 93 336 Antisense
TCGTCGTCTACCACGTGGTCAAGAA 551 603 348 Antisense
AATGGGTCACGATGTGTTCCATGTG 531 163 390 Antisense
Sequence Source Affymetrix Proprietary Database