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[186989_at]

Description F59E11.12 /REP_DB=WormBase Gene ID /WP=CE11516 /TR=O16754 /GB=AAG24146.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 46      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 265
(3)
P 		131.4
(-0.2)
A 		16.8
(-3)
A 		206.9
(1.6)
P 		248
B 300.7
(3)
P 		182.4
(-0.1)
A 		69.8
(-3)
M 		231.6
(1.2)
P 		231
C 267.1
(3)
P 		128.1
(-2.9)
P 		125
(-3)
P 		177.7
(-0.8)
P 		142
avr 277.6
(3) 		147.3
(-0.8) 		70.5
(-3) 		205.4
(0.9) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 210.3
(0.7)
P 		189.1
(-0.1)
P 		192.7
(0)
P 		127.4
(-2.4)
P 		111.6
(-3)
P 		271.7
(3)
P 		160
B 179.1
(-1.9)
P 		483.1
(3)
P 		227.1
(-1.2)
P 		273.4
(-0.4)
P 		113.8
(-3)
P 		226.2
(-1.2)
P 		369
C 155.6
(-0.7)
P 		262.7
(2.5)
P 		142.9
(-1)
P 		279.3
(3)
P 		76.6
(-3)
P 		266.8
(2.6)
P 		203
avr 181.7
(-0.7) 		311.6
(3) 		187.6
(-0.5) 		226.7
(0.6) 		100.7
(-3) 		254.9
(1.4) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 96.5
(3)
P 		28.5
(-1.4)
A 		4.4
(-3)
A 		30.3
(-1.3)
P 		92
B 95.9
(3)
P 		45.1
(-0.8)
A 		16.2
(-3)
M 		49.4
(-0.5)
P 		80
C 88.4
(3)
P 		36.8
(-2.3)
P 		43.6
(-1.6)
P 		30
(-3)
P 		58
avr 93.6
(3) 		36.8
(-1.7) 		21.4
(-3) 		36.6
(-1.7) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 38.8
(-1.9)
P 		67.2
(3)
P 		42
(-1.3)
P 		32.3
(-3)
P 		33.7
(-2.8)
P 		66.1
(2.8)
P 		35
B 62.3
(-2.2)
P 		160.8
(3)
P 		55.1
(-2.5)
P 		72.4
(-1.6)
P 		46.2
(-3)
P 		84.3
(-1)
P 		115
C 57.7
(0.1)
P 		80.1
(2.1)
P 		36.4
(-1.9)
P 		56.2
(-0.1)
P 		24.8
(-3)
P 		89.3
(3)
P 		65
avr 52.9
(-1.4) 		102.7
(3) 		44.5
(-2.2) 		53.6
(-1.3) 		34.9
(-3) 		79.9
(1) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12014
Sequence Type Exemplar sequence
Representative Public ID F59E11.12 NCBI
Target Description F59E11.12 /REP_DB=WormBase Gene ID /WP=CE11516 /TR=O16754 /GB=AAG24146.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028833(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028833 NCBI Caenorhabditis elegans F59E11.12b (F59E11.12) mRNA, complete cds. 9/11 None
SNAP00000037877 ENSEMBL cdna:SNAP chromosome:CEL140:V:8978401:8979522:-1 9/11 None
GENEFINDER00000037894 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8978284:8980051:-1 11/11 None
F59E11.12b.1 ENSEMBL cdna:known chromosome:CEL140:V:8978123:8980024:-1 gene:F59E11.12 9/11 None
F59E11.12b.2 ENSEMBL cdna:known chromosome:CEL140:V:8978313:8979522:-1 gene:F59E11.12 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028832 2/11 Cross Hyb Matching Probes None
F59E11.12a 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
186627 2 1 NM_001028833 186989_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8978284-8980052(-) 100.0 100.0
Public Domain and Genome References
Ensembl F59E11.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32115 hypothetical protein F59E11.12 - Caenorhabditis elegans 1.0E-174
blast CAE72058 Hypothetical protein CBG19144 [Caenorhabditis briggsae] 1.0E-117
blast T32115 hypothetical protein F59E11.12 - Caenorhabditis elegans 3.0E-85
blast CAE62509 Hypothetical protein CBG06614 [Caenorhabditis briggsae] 1.0E-73
blast CAE72058 Hypothetical protein CBG19144 [Caenorhabditis briggsae] 1.0E-52
blast CAE62509 Hypothetical protein CBG06614 [Caenorhabditis briggsae] 4.0E-37
blast AAQ91902 Hypothetical protein F59E11.12b [Caenorhabditis elegans] ref|NP_001024004.1| F59E11.12b [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-8
Sequence
Target Sequence 
>C. ELEGANS:186989_AT
gagaaactgcgatatcttcatgggaagatcagattttagctgttgtcaaatggctcaatt
actcaaatgcgtttaggaatcttccatatcatttgagactacaacttgttcaaacgacat
ggtcaacttggaataaactagaaaggactgcaatgacggcacagatgagggttaataggc
agtgcggtaagaatcagttcgtcgtgtcaaataatcatctttccgattactcccgaatgg
atgcagatatgagctgtttattcaatgcaaaagatttgttctatgatgatattgtgtggg
gaattgtcgaattgaaaccggatttagttgaactcgcctatctcttgtgtactttatctt
ttggaatggcaggaaaaatcattcaaggcgagttattagatgctactgaaaaactacttg
atacgttggctaatgatttgcatttgtattacacaaaaaggaataaagttccatatgcat
tgcgactgagtcaattactaaaagtttgtgataaatttgttaaactaagaaatagtagaa
gcgagaaatttcacttgtgcgctattcttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAACTGCGATATCTTCATGGGA 252 393 380 Antisense
AATGGCTCAATTACTCAAATGCGTT 652 161 428 Antisense
GGAATCTTCCATATCATTTGAGACT 453 533 455 Antisense
AAAGGACTGCAATGACGGCACAGAT 597 121 521 Antisense
GCGGTAAGAATCAGTTCGTCGTGTC 451 291 563 Antisense
ATCTTTCCGATTACTCCCGAATGGA 393 31 596 Antisense
ATTTAGTTGAACTCGCCTATCTCTT 674 15 701 Antisense
GCCTATCTCTTGTGTACTTTATCTT 123 283 715 Antisense
ACTACTTGATACGTTGGCTAATGAT 206 101 792 Antisense
GTTCCATATGCATTGCGACTGAGTC 495 441 847 Antisense
ATTTCACTTGTGCGCTATTCTTGGA 557 15 927 Antisense
Sequence Source Affymetrix Proprietary Database