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[186987_at]

Description Y39A3CR.2 /REP_DB=WormBase Gene ID /WP=CE25259 /TR=Q9N406 /GB=AAF60527.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 121.1
(0.3)
P 		83.7
(-3)
A 		104.2
(-1.2)
A 		151.1
(3)
P 		67
B 137
(0.2)
P 		123
(-1.1)
P 		102.8
(-3)
M 		166.4
(3)
A 		64
C 118.6
(1.5)
P 		99.7
(-3)
A 		115.6
(0.8)
M 		124.7
(3)
P 		25
avr 125.6
(0.1) 		102.1
(-3) 		107.5
(-2.3) 		147.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 58.7
(1.4)
A 		50.7
(0.6)
A 		51.6
(0.7)
A 		22.5
(-2.5)
A 		18.1
(-3)
A 		72.9
(3)
P 		55
B 87.9
(3)
A 		19.3
(-2.5)
A 		13.3
(-3)
A 		51.1
(0)
A 		51.9
(0.1)
A 		62.5
(1)
A 		75
C 94.4
(3)
A 		35.3
(-2.3)
A 		76
(1.3)
A 		28
(-3)
A 		38.4
(-2.1)
A 		81.5
(1.8)
P 		66
avr 80.3
(3) 		35.1
(-2.8) 		47
(-1.3) 		33.9
(-3) 		36.1
(-2.7) 		72.3
(2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 44.1
(3)
P 		18.2
(-3)
A 		27.2
(-0.9)
A 		22.1
(-2.1)
P 		26
B 43.7
(3)
P 		30.4
(-1)
P 		23.8
(-3)
M 		35.5
(0.5)
A 		20
C 39.3
(2.7)
P 		28.7
(-0.6)
A 		40.3
(3)
M 		21
(-3)
P 		19
avr 42.4
(3) 		25.8
(-3) 		30.4
(-1.3) 		26.2
(-2.9) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 10.8
(-0.5)
A 		18
(3)
A 		11.2
(-0.3)
A 		5.7
(-2.9)
A 		5.5
(-3)
A 		17.8
(2.9)
P 		13
B 30.6
(3)
A 		6.4
(-2.3)
A 		3.2
(-3)
A 		13.5
(-0.7)
A 		21.1
(0.9)
A 		23.3
(1.4)
A 		27
C 35
(3)
A 		10.8
(-1.9)
A 		19.3
(-0.2)
A 		5.6
(-3)
A 		12.4
(-1.6)
A 		27.3
(1.4)
P 		29
avr 25.5
(3) 		11.7
(-1.8) 		11.2
(-2) 		8.3
(-3) 		13
(-1.4) 		22.8
(2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8268
Sequence Type Exemplar sequence
Representative Public ID Y39A3CR.2 NCBI
Target Description Y39A3CR.2 /REP_DB=WormBase Gene ID /WP=CE25259 /TR=Q9N406 /GB=AAF60527.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065067 NCBI Caenorhabditis elegans Y39A3CR.3 (Y39A3CR.3) mRNA, complete cds. 11/11 None
SNAP00000029613 ENSEMBL cdna:SNAP chromosome:CEL140:III:1860427:1878231:1 10/11 None
GENEFINDER00000029617 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1860427:1876989:1 10/11 None
Y39A3CR.3 ENSEMBL cdna:known chromosome:CEL140:III:1860418:1877104:1 gene:Y39A3CR.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1870160-1876989(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3CR.3
Entrez Gene 175332 Entrez gene
SwissProt Q9N407 EMBL-EBI
WormBase CE30711 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17165_AT calmodulin-binding protein at
ATH1-121501:265243_AT calmodulin-binding protein at
CANINE:1594726_AT similar to tetratricopeptide repeat domain 7B cfa
CANINE_2:CFA.17869.1.S1_S_AT similar to tetratricopeptide repeat domain 7B cfa
CANINE_2:CFA.19603.1.S1_S_AT similar to tetratricopeptide repeat domain 7B cfa
CANINE_2:CFAAFFX.26793.1.S1_S_AT similar to tetratricopeptide repeat domain 7B cfa
DROSOPHILA_2:1634331_AT dm
DROSGENOME1:142659_AT dm
CHICKEN:GGAAFFX.12795.1.S1_AT tetratricopeptide repeat domain 7B gga
CHICKEN:GGAAFFX.6751.1.S1_S_AT tetratricopeptide repeat domain 7B gga
CHICKEN:GGAAFFX.6751.2.S1_AT tetratricopeptide repeat domain 7B gga
HU35KSUBB:RC_H99675_AT tetratricopeptide repeat domain 7B hs
U133_X3P:HS.19762.0.S1_3P_AT tetratricopeptide repeat domain 7B hs
HG-U133_PLUS_2:226152_AT tetratricopeptide repeat domain 7B hs
HG-U133B:226152_AT tetratricopeptide repeat domain 7B hs
HG-U95B:49345_AT tetratricopeptide repeat domain 7B hs
U133_X3P:HS2.370551.1.S1_3P_S_AT Tetratricopeptide repeat domain 7B hs
U133_X3P:HS2.249999.1.S1_3P_AT Tetratricopeptide repeat domain 7B hs
HG-U133_PLUS_2:1556374_S_AT Tetratricopeptide repeat domain 7B hs
HG-U133_PLUS_2:1568722_AT Tetratricopeptide repeat domain 7B hs
HG-U95D:77633_AT Tetratricopeptide repeat domain 7B hs
HG-U95E:87596_AT Tetratricopeptide repeat domain 7B hs
MU11KSUBA:AA408451_RC_S_AT tetratricopeptide repeat domain 7B mm
MG-U74AV2:160777_AT tetratricopeptide repeat domain 7B mm
MOE430A:1433460_AT tetratricopeptide repeat domain 7B mm
MOUSE430A_2:1433460_AT tetratricopeptide repeat domain 7B mm
MOUSE430_2:1433460_AT tetratricopeptide repeat domain 7B mm
MOE430A:1456029_A_AT tetratricopeptide repeat domain 7B mm
MOUSE430A_2:1456029_A_AT tetratricopeptide repeat domain 7B mm
MOUSE430_2:1456029_A_AT tetratricopeptide repeat domain 7B mm
MG-U74CV2:130339_AT PREDICTED: tetratricopeptide repeat domain 7B [Mus musculus], mRNA sequence mm
RAE230A:1376035_AT Tetratricopeptide repeat domain 7B (predicted) rn
RAT230_2:1376035_AT Tetratricopeptide repeat domain 7B (predicted) rn
RAE230B:1378920_AT Tetratricopeptide repeat domain 7B (predicted) rn
RAT230_2:1378920_AT Tetratricopeptide repeat domain 7B (predicted) rn
RG-U34B:RC_AA901357_AT Tetratricopeptide repeat domain 7B (predicted) rn
RG-U34C:RC_AI228392_AT Tetratricopeptide repeat domain 7B (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60527 Hypothetical protein Y39A3CR.3 [Caenorhabditis elegans] ref|NP_497468.2| Y39A3CR.3 [Caenorhabditis elegans] 0.0
blast CAE69155 Hypothetical protein CBG15186 [Caenorhabditis briggsae] 0.0
blast AAF57269 CG8325-PA [Drosophila melanogaster] ref|NP_652063.1| CG8325-PA [Drosophila melanogaster] gb|AAD34768.1| unknown [Drosophila melanogaster] 5.0E-53
blast AAF57269 CG8325-PA [Drosophila melanogaster] ref|NP_652063.1| CG8325-PA [Drosophila melanogaster] gb|AAD34768.1| unknown [Drosophila melanogaster] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:186987_AT
ccgttgtcctcagcattaccggttataagtgcaattccgtctaacgcgtcgactatggat
ctttctggagcagccgaatcaatagttggcggtggtgcgtcagaagtgggcggagccgcg
tccacgaattcggattcgctgaattcgggaatcggtgacgcgtggtcgaaatttcgaaca
caagccgatgtttggatgtgtctagcagaattatatataaatgaaggaagacatgcagat
ttgacaaaaggtcgcctgctagtttcccgatgtcaaaagctcgccgacgagacgctagtc
tccagaattcgaggagaagcaaaatcggcatatcttgcagcgctagcacttgcacccggc
cattttcagtcaatgtcagcgttggcgaagctctacgaagaggaaggaaatcagaaaatg
gctgagcacatgctgagagaaatggtacgtgtggaccctctaaactgtgaatggtggcaa
caattgggatgttctctaatgaaacgtggcgattcggaccgtgcaactgaatgtctcacc
gctgccgctcaattggacagatctacgccgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTTGTCCTCAGCATTACCGGTTA 596 261 1198 Antisense
CAATTCCGTCTAACGCGTCGACTAT 709 179 1229 Antisense
GACTATGGATCTTTCTGGAGCAGCC 441 373 1248 Antisense
TTCGGGAATCGGTGACGCGTGGTCG 520 651 1341 Antisense
GACAAAAGGTCGCCTGCTAGTTTCC 172 365 1440 Antisense
AAAGCTCGCCGACGAGACGCTAGTC 669 123 1473 Antisense
TCGGCATATCTTGCAGCGCTAGCAC 146 607 1522 Antisense
TACGTGTGGACCCTCTAAACTGTGA 152 647 1643 Antisense
TGAAACGTGGCGATTCGGACCGTGC 355 571 1697 Antisense
GGACCGTGCAACTGAATGTCTCACC 149 523 1713 Antisense
TCAATTGGACAGATCTACGCCGCTT 241 635 1746 Antisense
Sequence Source Affymetrix Proprietary Database