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[186986_at]

Description F55H2.7 /REP_DB=WormBase Gene ID /WP=CE28034 /TR=SW:P34467 /GB=CAA81604.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      4grp_high_8_8 > 04      6grp_total > 99      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 105.9
(-1.3)
P 		71.1
(-2.7)
P 		63.5
(-3)
P 		213.6
(3)
P 		150
B 63.2
(-2.5)
P 		50.1
(-3)
P 		51
(-3)
A 		213.6
(3)
P 		164
C 112.8
(0.4)
P 		44.7
(-3)
P 		72
(-1.6)
P 		164.8
(3)
P 		120
avr 94
(-1.4) 		55.3
(-3) 		62.2
(-2.7) 		197.3
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 31.4
(-3)
A 		67.9
(0.5)
P 		56.4
(-0.6)
P 		85.6
(2.2)
P 		85.4
(2.2)
P 		94.1
(3)
P 		63
B 87.7
(0.2)
P 		79.6
(-0.4)
P 		107.2
(1.5)
P 		41.7
(-3)
P 		115.5
(2.1)
P 		128.8
(3)
P 		87
C 147.8
(2)
P 		75.3
(-2.9)
P 		74.4
(-3)
P 		103.8
(-1)
P 		162.2
(3)
P 		117
(-0.1)
P 		88
avr 89
(-1.1) 		74.3
(-3) 		79.3
(-2.4) 		77
(-2.7) 		121
(3) 		113.3
(2) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 38.6
(3)
P 		15.4
(-3)
P 		16.6
(-2.7)
P 		31.3
(1.1)
P 		23
B 20.2
(-1.5)
P 		12.4
(-2.9)
P 		11.8
(-3)
A 		45.5
(3)
P 		34
C 37.3
(3)
P 		12.9
(-3)
P 		25.1
(0)
P 		27.8
(0.7)
P 		24
avr 32
(2.2) 		13.6
(-3) 		17.8
(-1.8) 		34.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 5.8
(-3)
A 		24.1
(2.5)
P 		12.3
(-1.1)
P 		21.7
(1.8)
P 		25.8
(3)
P 		22.9
(2.1)
P 		20
B 30.5
(0.2)
P 		26.5
(-0.5)
P 		26
(-0.6)
P 		11
(-3)
P 		46.9
(2.8)
P 		48
(3)
P 		37
C 54.8
(3)
P 		23
(-2.3)
P 		18.9
(-3)
P 		20.9
(-2.7)
P 		52.5
(2.6)
P 		39.2
(0.4)
P 		36
avr 30.4
(0.2) 		24.5
(-1.3) 		19.1
(-2.7) 		17.9
(-3) 		41.7
(3) 		36.7
(1.7) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7998
Sequence Type Exemplar sequence
Representative Public ID F55H2.7 NCBI
Target Description F55H2.7 /REP_DB=WormBase Gene ID /WP=CE28034 /TR=SW:P34467 /GB=CAA81604.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066695
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F55H2.7 ENSEMBL cdna:known chromosome:CEL140:III:9513309:9516144:-1 gene:F55H2.7 A 
GENEFINDER00000007122 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9513474:9516143:-1 None
SNAP00000007119 ENSEMBL cdna:SNAP chromosome:CEL140:III:9513474:9516143:-1 None
NM_066695 NCBI Caenorhabditis elegans F55H2.7 (F55H2.7) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9514287-9516139(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55H2.7
Entrez Gene 176340 Entrez gene
SwissProt P34467 EMBL-EBI
WormBase CE34033 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA81604 Hypothetical protein F55H2.7 [Caenorhabditis elegans] ref|NP_499096.2| F55H2.7 [Caenorhabditis elegans] sp|P34467|YMF7_CAEEL Hypothetical protein F55H2.7 in chromosome III 0.0
blast CAE65193 Hypothetical protein CBG10068 [Caenorhabditis briggsae] 2.0E-79
Sequence
Target Sequence 
>C. ELEGANS:186986_AT
gaccagaaattcggaatgtctcgaaagaatcattttcaattgtttattctggaagagaca
caggattttcaatttttaaagcagcagaatcgtcacttgtggaaagaaggcaacgagaat
acgattcatttttgaagggaaaatatgagccatctaagaagactttcaaatttgatgaac
gagataattattgtcagttctgccaaaaaacgattcttggagacaggaaagataaattcc
acaagagagaaaaaaaacaaaaaatccacgaaagaaccgatgaacatcgcaataaggctc
gaactcaaggaattactcaaacaatggaaagaattgttttgaatgctcgattacgagccg
aacgtcaggaagcggctttgaaaagaaatcaaagaaaatcacgagaaagtgtgatgtttg
tagaaaagtcgaaacgagcaaatgtcgagtacgaatatggagaaaatgaaattaaagcga
attggcttatgctgaaagcaaatacagtggaaaagacgactgagaaaacatcgatacttt
gtgccattatttcattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAGAAATTCGGAATGTCTCGAA 689 383 590 Antisense
AGCAGCAGAATCGTCACTTGTGGAA 18 77 669 Antisense
GAGATAATTATTGTCAGTTCTGCCA 417 397 770 Antisense
GTCAGTTCTGCCAAAAAACGATTCT 615 465 782 Antisense
ATCCACGAAAGAACCGATGAACATC 160 39 853 Antisense
GAACATCGCAATAAGGCTCGAACTC 400 351 871 Antisense
GAATTGTTTTGAATGCTCGATTACG 668 323 920 Antisense
CTCGATTACGAGCCGAACGTCAGGA 475 211 935 Antisense
CCGAACGTCAGGAAGCGGCTTTGAA 681 261 947 Antisense
GAAAACATCGATACTTTGTGCCATT 456 355 1113 Antisense
GATACTTTGTGCCATTATTTCATTG 24 425 1122 Antisense
Sequence Source Affymetrix Proprietary Database