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[186985_at]

Description F59C6.8 /REP_DB=WormBase Gene ID /WP=CE11470 /TR=SW:Q93834 /GB=CAB01879.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 56      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 77.3
(3)
A 		57.2
(0.9)
M 		77.5
(3)
A 		18.4
(-3)
A 		59
B 40.6
(-3)
A 		59.3
(1.7)
A 		59.1
(1.7)
A 		64.3
(3)
M 		24
C 40.7
(-3)
P 		54.5
(-0.1)
A 		65.6
(2.3)
P 		68.8
(3)
A 		28
avr 52.9
(-2.1) 		57
(-0.7) 		67.4
(3) 		50.5
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 91
(3)
P 		77.7
(2.1)
M 		48.7
(0.1)
M 		37.1
(-0.7)
P 		12.6
(-2.4)
A 		4.6
(-3)
A 		86
B 59.3
(2.9)
P 		59.8
(3)
A 		24.1
(-3)
A 		53.8
(2)
A 		39.4
(-0.4)
P 		44.6
(0.4)
A 		36
C 42.5
(-1.2)
P 		77.4
(3)
A 		64
(1.4)
A 		28
(-3)
A 		34.1
(-2.3)
A 		31.2
(-2.6)
A 		49
avr 64.3
(2) 		71.6
(3) 		45.6
(-0.5) 		39.6
(-1.3) 		28.7
(-2.7) 		26.8
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 28.1
(3)
A 		12.4
(-0.7)
M 		20.3
(1.2)
A 		2.7
(-3)
A 		25
B 13
(-3)
A 		14.7
(3)
A 		13.7
(-0.5)
A 		13.7
(-0.5)
M 		2
C 13.5
(-2)
P 		15.7
(-0.8)
A 		22.9
(3)
P 		11.6
(-3)
A 		11
avr 18.2
(2.5) 		14.3
(0.1) 		19
(3) 		9.3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 16.8
(0.6)
P 		27.6
(3)
M 		10.6
(-0.8)
M 		9.4
(-1.1)
P 		3.8
(-2.4)
A 		1.1
(-3)
A 		27
B 20.6
(3)
P 		19.9
(2.7)
A 		5.9
(-3)
A 		14.2
(0.4)
A 		16
(1.1)
P 		16.6
(1.4)
A 		15
C 15.7
(0.4)
P 		23.6
(3)
A 		16.3
(0.6)
A 		5.6
(-3)
A 		11
(-1.2)
A 		10.5
(-1.4)
A 		18
avr 17.7
(0.5) 		23.7
(3) 		10.9
(-2.4) 		9.7
(-2.9) 		10.3
(-2.6) 		9.4
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1004
Sequence Type Exemplar sequence
Representative Public ID F59C6.8 NCBI
Target Description F59C6.8 /REP_DB=WormBase Gene ID /WP=CE11470 /TR=SW:Q93834 /GB=CAB01879.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060347 NCBI Caenorhabditis elegans F59C6.8 (F59C6.8) mRNA, complete cds. 11/11 None
SNAP00000029114 ENSEMBL cdna:SNAP chromosome:CEL140:I:10518930:10519798:1 9/11 None
GENEFINDER00000029128 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10518930:10521417:1 11/11 None
F59C6.8 ENSEMBL cdna:known chromosome:CEL140:I:10517090:10521487:1 gene:F59C6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029115 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10518860-10520725(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59C6.8
Entrez Gene 186606 Entrez gene
SwissProt Q93834 EMBL-EBI
WormBase CE37526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01879 Hypothetical protein F59C6.8 [Caenorhabditis elegans] ref|NP_492748.2| F59C6.8 [Caenorhabditis elegans] sp|Q93834|YYVP_CAEEL Hypothetical protein F59C6.8 in chromosome I 0.0
blast CAE58959 Hypothetical protein CBG02229 [Caenorhabditis briggsae] 1.0E-142
blast CAE58959 Hypothetical protein CBG02229 [Caenorhabditis briggsae] 1.0E-139
blast CAB01879 Hypothetical protein F59C6.8 [Caenorhabditis elegans] ref|NP_492748.2| F59C6.8 [Caenorhabditis elegans] sp|Q93834|YYVP_CAEEL Hypothetical protein F59C6.8 in chromosome I 1.0E-103
blast CAE58959 Hypothetical protein CBG02229 [Caenorhabditis briggsae] 4.0E-87
blast CAA95788 Hypothetical protein F13G3.3 [Caenorhabditis elegans] ref|NP_492062.1| F13G3.3 [Caenorhabditis elegans] sp|Q19417|YSNK_CAEEL Hypothetical protein F13G3.3 in chromosome I 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.7E-23
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-27
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 7.4E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492748.2 1 19-41
F59C6.8 1 19-41
Sequence
Target Sequence 
>C. ELEGANS:186985_AT
catgtttctctccgttatttttgaatgaaagatggcagcttcttcttgcaactgttgaga
tatactctcattatggtgcattcatgcatttctataccagaatttctccttggtctgcta
taagaattggagaatctcgtgccgcgtctccgatgttcgatccaaacactgaacttgagt
tccggaatcaagcttcagctatgactgattgtctactgcaatataaggaagccgcagagt
ttattgtatttccggatccagatgacatccttgttccagtgttgggcaaaaattattatg
aagagtttacgcaggcgtttaaaatgttccccacggccggtgcggtcgtttataatatga
cacagacttccattgaatcttcaatgacaccagcgttgtattcacctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGTTTCTCTCCGTTATTTTTGAA 169 209 209 Antisense
GCAGCTTCTTCTTGCAACTGTTGAG 702 313 243 Antisense
TGCATTCATGCATTTCTATACCAGA 498 579 285 Antisense
ACCAGAATTTCTCCTTGGTCTGCTA 180 85 304 Antisense
GAATTGGAGAATCTCGTGCCGCGTC 115 323 332 Antisense
GTCTCCGATGTTCGATCCAAACACT 305 471 354 Antisense
GAGTTCCGGAATCAAGCTTCAGCTA 112 397 385 Antisense
GAGTTTATTGTATTTCCGGATCCAG 277 399 445 Antisense
GGATCCAGATGACATCCTTGTTCCA 314 513 462 Antisense
GCAGGCGTTTAAAATGTTCCCCACG 308 269 519 Antisense
GACACCAGCGTTGTATTCACCTATT 96 367 594 Antisense
Sequence Source Affymetrix Proprietary Database