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[186984_at]

Description T09A5.7 /REP_DB=WormBase Gene ID /WP=CE01088 /TR=SW:P45967 /GB=CAA85335.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 73      6grp_total > 36      4grp_total > 33      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 428.3
(-3)
P 		442.9
(-2.5)
P 		432.3
(-2.9)
P 		593.7
(3)
P 		165
B 400
(-3)
P 		589.4
(0.8)
P 		697.4
(3)
P 		574.8
(0.5)
P 		297
C 509.2
(-2.3)
P 		662.2
(3)
P 		561.2
(-0.5)
P 		488.7
(-3)
P 		174
avr 445.8
(-3) 		564.8
(3) 		563.6
(2.9) 		552.4
(2.4) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 636.7
(3)
P 		504.7
(-0.4)
P 		571.5
(1.3)
P 		404.4
(-3)
P 		433.3
(-2.3)
P 		454.5
(-1.7)
P 		232
B 515.5
(-2.2)
P 		649.1
(3)
P 		587.7
(0.6)
P 		494.2
(-3)
P 		596
(0.9)
P 		568.5
(-0.1)
P 		155
C 660.7
(1.4)
P 		664.1
(1.4)
P 		393.5
(-3)
P 		393.4
(-3)
P 		523
(-0.9)
P 		758.5
(3)
P 		365
avr 604.3
(2.9) 		606
(3) 		517.6
(-0) 		430.7
(-3) 		517.4
(-0) 		593.8
(2.6) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 155.9
(3)
P 		96.1
(-2.2)
P 		113
(-0.7)
P 		86.9
(-3)
P 		69
B 127.6
(-2.2)
P 		145.6
(0.5)
P 		161.6
(3)
P 		122.5
(-3)
P 		39
C 168.6
(1.6)
P 		190.4
(2.7)
P 		195.6
(3)
P 		82.4
(-3)
P 		113
avr 150.7
(2.4) 		144
(1.7) 		156.7
(3) 		97.3
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 117.4
(-1.8)
P 		179.5
(3)
P 		124.5
(-1.3)
P 		102.6
(-3)
P 		130.8
(-0.8)
P 		110.6
(-2.4)
P 		77
B 179.4
(-0.4)
P 		216.1
(1.6)
P 		142.7
(-2.4)
P 		130.9
(-3)
P 		242.1
(3)
P 		212
(1.4)
P 		111
C 244.9
(2.7)
P 		202.6
(1.2)
P 		100.2
(-2.3)
P 		79.1
(-3)
P 		169.2
(0.1)
P 		253.9
(3)
P 		175
avr 180.6
(1.8) 		199.4
(3) 		122.5
(-1.8) 		104.2
(-3) 		180.7
(1.8) 		192.2
(2.5) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4246
Sequence Type Exemplar sequence
Representative Public ID T09A5.7 NCBI
Target Description T09A5.7 /REP_DB=WormBase Gene ID /WP=CE01088 /TR=SW:P45967 /GB=CAA85335.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063250 NCBI Caenorhabditis elegans T09A5.7 (T09A5.7) mRNA, complete cds. 11/11 None
SNAP00000029437 ENSEMBL cdna:SNAP chromosome:CEL140:II:7855216:7855627:-1 11/11 None
T09A5.7.1 ENSEMBL cdna:known chromosome:CEL140:II:7855055:7855640:-1 gene:T09A5.7 11/11 None
T09A5.7.2 ENSEMBL cdna:known chromosome:CEL140:II:7855063:7855642:-1 gene:T09A5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029450 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7855212-7855624(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09A5.7
Entrez Gene 174264 Entrez gene
SwissProt P45967 EMBL-EBI
WormBase CE01088 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85335 Hypothetical protein T09A5.7 [Caenorhabditis elegans] ref|NP_495651.1| T09A5.7 [Caenorhabditis elegans] gb|AAG41146.1| 2I146 [Caenorhabditis elegans] sp|P45967|YNZ7_CAEEL Hypothetical UPF0203 protein T09A5.7 in chromosome III 2.0E-57
blast CAE59835 Hypothetical protein CBG03307 [Caenorhabditis briggsae] 4.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR007918 EMBL-EBI Protein of unknown function UPF0203 4.9E-51
Sequence
Target Sequence 
>C. ELEGANS:186984_AT
gacacatgtctagtatttttcccgaatgcgatcatctcaagcagatctacgacaaatgct
tcacagaattcttccaaaagttcatcactcccaattacaggcatcagtatgctgtaaatc
catgcgagagattacatgatgtttacaagcgatgcgttgaagagagattagctacacaac
gaccgttcgaaatagatttggacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACATGTCTAGTATTTTTCCCGA 280 367 23 Antisense
TTTTTCCCGAATGCGATCATCTCAA 324 675 38 Antisense
GATCATCTCAAGCAGATCTACGACA 301 421 52 Antisense
GACAAATGCTTCACAGAATTCTTCC 513 365 73 Antisense
AGTTCATCACTCCCAATTACAGGCA 45 65 101 Antisense
ATCACTCCCAATTACAGGCATCAGT 203 29 106 Antisense
ATCAGTATGCTGTAAATCCATGCGA 179 29 125 Antisense
CATGATGTTTACAAGCGATGCGTTG 58 211 157 Antisense
GATGCGTTGAAGAGAGATTAGCTAC 49 413 173 Antisense
GAGATTAGCTACACAACGACCGTTC 251 323 186 Antisense
GACCGTTCGAAATAGATTTGGACGA 314 381 203 Antisense
Sequence Source Affymetrix Proprietary Database