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[186983_at]

Description Y113G7A.11 /REP_DB=WormBase Gene ID /WP=CE23282 /TR=Q9U2Z2 /GB=CAB60475.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 15      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 74.7
(3)
P 		2.4
(-3)
A 		22.6
(-1.3)
A 		31.3
(-0.6)
A 		72
B 99.7
(3)
M 		4.3
(-3)
A 		40.3
(-0.7)
A 		77.1
(1.6)
A 		95
C 52.6
(-0.2)
A 		3.8
(-2.9)
A 		2.2
(-3)
A 		109.1
(3)
A 		107
avr 75.7
(3) 		3.5
(-3) 		21.7
(-1.5) 		72.5
(2.7) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 29.1
(-0.2)
A 		6
(-2.8)
A 		34.8
(0.4)
A 		4.2
(-3)
A 		16.5
(-1.6)
A 		57.6
(3)
A 		53
B 37.2
(1.3)
A 		5.6
(-2.6)
A 		3
(-2.9)
A 		14.8
(-1.4)
A 		2.1
(-3)
A 		50.6
(3)
A 		49
C 46.2
(3)
A 		43
(2.6)
A 		6.3
(-2.4)
A 		3
(-2.9)
A 		2.1
(-3)
A 		45.1
(2.9)
A 		44
avr 37.5
(1.2) 		18.2
(-1.5) 		14.7
(-1.9) 		7.3
(-2.9) 		6.9
(-3) 		51.1
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 27.2
(3)
P 		0.5
(-3)
A 		5.9
(-1.8)
A 		4.6
(-2.1)
A 		27
B 31.8
(3)
M 		1
(-3)
A 		9.3
(-1.4)
A 		16.4
(0)
A 		31
C 17.4
(2.7)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		18.4
(3)
A 		18
avr 25.5
(3) 		0.9
(-3) 		5.3
(-1.9) 		13.1
(-0) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.4
(-1)
A 		2.1
(-2.5)
A 		7.6
(0)
A 		1.1
(-3)
A 		5
(-1.2)
A 		14
(3)
A 		13
B 13
(1.1)
A 		1.9
(-2.6)
A 		0.7
(-3)
A 		3.9
(-1.9)
A 		0.9
(-2.9)
A 		18.9
(3)
A 		18
C 17.1
(3)
A 		13.1
(1.5)
A 		1.6
(-2.6)
A 		0.6
(-3)
A 		0.7
(-3)
A 		15.1
(2.3)
A 		17
avr 11.8
(1.2) 		5.7
(-1.4) 		3.3
(-2.4) 		1.9
(-3) 		2.2
(-2.9) 		16
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13970
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.11 NCBI
Target Description Y113G7A.11 /REP_DB=WormBase Gene ID /WP=CE23282 /TR=Q9U2Z2 /GB=CAB60475.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075479 NCBI Caenorhabditis elegans Suppressor of Stomatin mutant Uncoordination family member (ssu-1) (ssu-1) mRNA, complete cds. 11/11 None
GENEFINDER00000016744 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20126413:20131139:-1 11/11 None
Y113G7A.11 ENSEMBL cdna:known chromosome:CEL140:V:20126413:20131139:-1 gene:Y113G7A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20126412-20131139(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ssu-1
Ensembl Y113G7A.11
Entrez Gene 190959 Entrez gene
SwissProt Q9U2Z2 EMBL-EBI
WormBase CE23282 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260385_AT sulfotransferase family protein at
CANINE:1582798_AT sulfotransferase family, cytosolic, 1B, member 1 cfa
CANINE_2:CFA.3501.1.S1_AT sulfotransferase family, cytosolic, 1B, member 1 cfa
CANINE_2:CFAAFFX.5225.1.S1_AT sulfotransferase family, cytosolic, 1B, member 1 cfa
CANINE_2:CFAAFFX.5225.1.S1_S_AT sulfotransferase family, cytosolic, 1B, member 1 cfa
CHICKEN:GGA.8853.2.S1_A_AT sulfotransferase family, cytosolic, 1B, member 1 gga
CHICKEN:GGA.8853.3.S1_S_AT sulfotransferase family, cytosolic, 1B, member 1 gga
HG-U95AV2:31744_AT sulfotransferase family, cytosolic, 1B, member 1 hs
HG-U133_PLUS_2:207601_AT sulfotransferase family, cytosolic, 1B, member 1 hs
HG-U133A:207601_AT sulfotransferase family, cytosolic, 1B, member 1 hs
HG-FOCUS:207601_AT sulfotransferase family, cytosolic, 1B, member 1 hs
HG-U133A_2:207601_AT sulfotransferase family, cytosolic, 1B, member 1 hs
U133_X3P:G7657620_3P_AT sulfotransferase family, cytosolic, 1B, member 1 hs
MOUSE430_2:1418940_AT sulfotransferase family 1B, member 1 mm
MOE430A:1418940_AT sulfotransferase family 1B, member 1 mm
MOUSE430A_2:1418940_AT sulfotransferase family 1B, member 1 mm
MG-U74AV2:104539_AT sulfotransferase family 1B, member 1 mm
MU19KSUBC:TC38089_AT Sulfotransferase family 1B, member 1, mRNA (cDNA clone MGC:35903 IMAGE:4990345) mm
RN-U34:D89375_S_AT sulfotransferase family 1B, member 1 rn
RT-U34:D89375_S_AT sulfotransferase family 1B, member 1 rn
RG-U34A:D89375_S_AT sulfotransferase family 1B, member 1 rn
RAE230A:1387314_AT sulfotransferase family 1B, member 1 rn
RAT230_2:1387314_AT sulfotransferase family 1B, member 1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8146 sulfotransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60475 Hypothetical protein Y113G7A.11 [Caenorhabditis elegans] ref|NP_507880.1| Suppressor of Stomatin mutant Uncoordination family member (ssu-1) [Caenorhabditis elegans] 0.0
blast CAE67440 Hypothetical protein CBG12932 [Caenorhabditis briggsae] 0.0
blast ZP_00518888 Sulfotransferase [Crocosphaera watsonii WH 8501] gb|EAM48023.1| Sulfotransferase [Crocosphaera watsonii WH 8501] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR000863 EMBL-EBI Sulfotransferase 2.8E-92
Sequence
Target Sequence 
>C. ELEGANS:186983_AT
tgagcatttgctcagctggttgccgtgtttgaaagatgataatgtgctctttttgaagta
tgaggatatgtttcaggatttggaaaatgctgtgtataagatcggtcaattcctcggggg
agaagctgctcaccgagttgaaaatccggaaatcctccgagaaatcgttgacaacagtac
aattgacgccatgaaaaaggatcagaagcgttggtttccagaatcccaactacacaaagt
agaatttattcggaaaggcggtagtcgtgattggaagaattatttcactcgggagcaatc
tgatcggattgactcaatttttgcggcgaaatttgccgggactcctgctgagcattggtg
gaaatacgaaatggcatgggaagagaaacccctctcaattgagaatctatccatggaaga
agaagaggaggagcagtcccagaagcttttcgcgttgcccccacttccaccacaacgtag
attctccagaacatccctattgtcagctggttacggtagtgtatggtccctgtcctctca
gaatgcaaatatgtcggccagctcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCATTTGCTCAGCTGGTTGCCG 133 569 651 Antisense
TAAGATCGGTCAATTCCTCGGGGGA 543 625 747 Antisense
TGGTTTCCAGAATCCCAACTACACA 137 551 862 Antisense
TTCACTCGGGAGCAATCTGATCGGA 666 685 934 Antisense
GCGGCGAAATTTGCCGGGACTCCTG 390 281 973 Antisense
GGACTCCTGCTGAGCATTGGTGGAA 592 523 989 Antisense
GGAGGAGCAGTCCCAGAAGCTTTTC 574 515 1077 Antisense
AGATTCTCCAGAACATCCCTATTGT 374 65 1129 Antisense
ATCCCTATTGTCAGCTGGTTACGGT 202 37 1143 Antisense
GTTACGGTAGTGTATGGTCCCTGTC 38 445 1160 Antisense
AATGCAAATATGTCGGCCAGCTCGT 706 165 1192 Antisense
Sequence Source Affymetrix Proprietary Database