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[186982_at]

Description Y57A10A.29 /REP_DB=WormBase Gene ID /WP=CE22606 /TR=Q9NA72 /GB=CAB55034.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 72      6grp_total > 64      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 430.5
(3)
P 		391.6
(-0.8)
P 		390.3
(-0.9)
P 		368.5
(-3)
P 		62
B 470.1
(3)
P 		388.6
(0.1)
P 		403.9
(0.6)
P 		301.7
(-3)
P 		168
C 509.9
(3)
P 		401.3
(-1.3)
P 		418.2
(-0.6)
P 		358.4
(-3)
P 		152
avr 470.2
(3) 		393.8
(-0.6) 		404.1
(-0.1) 		342.9
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 328.2
(-3)
P 		343.6
(-2.5)
P 		479.3
(2.2)
P 		501.8
(3)
P 		389.1
(-0.9)
P 		443.2
(1)
P 		174
B 379.8
(-3)
P 		398.2
(-1.9)
P 		483.2
(3)
P 		414.7
(-1)
P 		459.5
(1.6)
P 		452
(1.2)
P 		103
C 378.4
(-2.7)
P 		399.1
(-1.9)
P 		440.6
(-0.4)
P 		368.6
(-3)
P 		431.5
(-0.8)
P 		536.8
(3)
P 		168
avr 362.1
(-3) 		380.3
(-2.1) 		467.7
(2.5) 		428.4
(0.5) 		426.7
(0.4) 		477.3
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 156.7
(3)
P 		85
(-1.2)
P 		102
(-0.2)
P 		53.9
(-3)
P 		103
B 149.9
(3)
P 		96
(-0.8)
P 		93.6
(-0.9)
P 		64.3
(-3)
P 		86
C 168.8
(3)
P 		115.4
(0)
P 		145.7
(1.7)
P 		60.4
(-3)
P 		108
avr 158.5
(3) 		98.8
(-0.6) 		113.8
(0.3) 		59.5
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 60.5
(-3)
P 		122.2
(2.5)
P 		104.4
(0.9)
P 		127.3
(3)
P 		117.4
(2.1)
P 		107.9
(1.3)
P 		67
B 132.2
(-1.3)
P 		132.5
(-1.2)
P 		117.3
(-2.4)
P 		109.8
(-3)
P 		186.7
(3)
P 		168.5
(1.6)
P 		77
C 140.3
(0.8)
P 		121.8
(-0.3)
P 		112.2
(-0.8)
P 		74.1
(-3)
P 		139.6
(0.7)
P 		179.7
(3)
P 		106
avr 111
(-2.1) 		125.5
(-0.3) 		111.3
(-2.1) 		103.7
(-3) 		147.9
(2.5) 		152
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3974
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.29 NCBI
Target Description Y57A10A.29 /REP_DB=WormBase Gene ID /WP=CE22606 /TR=Q9NA72 /GB=CAB55034.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064206 NCBI Caenorhabditis elegans Y57A10A.29 (Y57A10A.29) mRNA, complete cds. 11/11 None
GENEFINDER00000026048 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12279611:12280065:1 11/11 None
Y57A10A.29 ENSEMBL cdna:known chromosome:CEL140:II:12279592:12280156:1 gene:Y57A10A.29 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026034 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12279607-12280062(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.29
Entrez Gene 174870 Entrez gene
SwissProt Q9NA72 EMBL-EBI
WormBase CE22606 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55034 Hypothetical protein Y57A10A.29 [Caenorhabditis elegans] ref|NP_496607.1| Y57A10A.29 [Caenorhabditis elegans] 2.0E-62
blast CAE73476 Hypothetical protein CBG20928 [Caenorhabditis briggsae] 2.0E-51
blast XP_697967 PREDICTED: similar to CG14757-PA [Danio rerio] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005631 EMBL-EBI Protein of unknown function DUF339 3.3E-21
Sequence
Target Sequence 
>C. ELEGANS:186982_AT
aagccggattttgcaacgattcttcactgtttcgacaagtttgaggagtctgacacgcgc
agaagttcccggagagaagattgatgcaaagagagcccggcttctctaccaaagcaaaaa
acgtggaattctggaaaacgacattctcctgggcgattttgccgagcaaaacctcaaaaa
aatgagcgagcccgagctgaaggcctacgataagctcatcaacggagaacacatggaatg
ggacctcttctactatctttccaacaagaaaagcccgccggaagacgtggaaagctgtca
ggtttaccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCGGATTTTGCAACGATTCTTC 99 147 18 Antisense
GATTCTTCACTGTTTCGACAAGTTT 636 431 35 Antisense
GTTTGAGGAGTCTGACACGCGCAGA 597 451 56 Antisense
ACGCGCAGAAGTTCCCGGAGAGAAG 330 89 72 Antisense
TGCAAAGAGAGCCCGGCTTCTCTAC 301 577 102 Antisense
GACATTCTCCTGGGCGATTTTGCCG 136 371 157 Antisense
AATGAGCGAGCCCGAGCTGAAGGCC 134 157 198 Antisense
GAAGGCCTACGATAAGCTCATCAAC 58 333 216 Antisense
CCTCTTCTACTATCTTTCCAACAAG 167 267 261 Antisense
AGCCCGCCGGAAGACGTGGAAAGCT 409 1 289 Antisense
GTGGAAAGCTGTCAGGTTTACCAAA 93 489 304 Antisense
Sequence Source Affymetrix Proprietary Database