[Home] | [Total List]

[186981_s_at]

Description ZK643.5 /REP_DB=WormBase Gene ID /WP=CE24732 /TR=SW:P30651 /GB=CAA77474.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 28      4grp_high_8_8 > 31      6grp_highest_nonorm > 73      6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 355.9
(-3)
P 		355.6
(-3)
P 		482
(3)
P 		398.3
(-1)
P 		126
B 338.7
(-0.9)
P 		287
(-3)
P 		372.4
(0.4)
P 		437.3
(3)
P 		150
C 454.4
(1.7)
P 		317.8
(-3)
P 		492.6
(3)
P 		434.4
(1)
P 		175
avr 383
(-0.1) 		320.1
(-3) 		449
(3) 		423.3
(1.8) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 483.4
(-3)
P 		687.6
(3)
P 		623.1
(1.1)
P 		544.2
(-1.2)
P 		487.4
(-2.9)
P 		508
(-2.3)
P 		204
B 507.9
(-2.1)
P 		580.6
(0.4)
P 		523.4
(-1.6)
P 		482
(-3)
P 		656.4
(3)
P 		640.6
(2.5)
P 		174
C 423.4
(-3)
P 		651.5
(2.2)
P 		472.7
(-1.9)
P 		530.3
(-0.6)
P 		463.4
(-2.1)
P 		687
(3)
P 		264
avr 471.6
(-3) 		639.9
(3) 		539.7
(-0.6) 		518.8
(-1.3) 		535.7
(-0.7) 		611.9
(2) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 129.6
(3)
P 		77.2
(-1.4)
P 		126
(2.7)
P 		58.3
(-3)
P 		71
B 108
(3)
P 		70.9
(-3)
P 		86.3
(-0.5)
P 		93.2
(0.6)
P 		37
C 150.4
(1.7)
P 		91.4
(-1.9)
P 		171.7
(3)
P 		73.3
(-3)
P 		98
avr 129.3
(3) 		79.8
(-2.5) 		128
(2.9) 		74.9
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 89.1
(-3)
P 		244.5
(3)
P 		135.7
(-1.2)
P 		138
(-1.1)
P 		147.1
(-0.8)
P 		123.7
(-1.7)
P 		155
B 176.7
(-0.9)
P 		193.3
(-0.2)
P 		127.1
(-3)
P 		127.7
(-3)
P 		266.7
(3)
P 		238.9
(1.8)
P 		140
C 156.9
(-0.6)
P 		198.8
(1.5)
P 		120.3
(-2.3)
P 		106.6
(-3)
P 		150
(-0.9)
P 		230
(3)
P 		123
avr 140.9
(-1.9) 		212.2
(3) 		127.7
(-2.8) 		124.1
(-3) 		187.9
(1.3) 		197.5
(2) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186981_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6837
Sequence Type Exemplar sequence
Representative Public ID ZK643.5 NCBI
Target Description ZK643.5 /REP_DB=WormBase Gene ID /WP=CE24732 /TR=SW:P30651 /GB=CAA77474.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066578 NCBI Caenorhabditis elegans ZK643.5 (ZK643.5) mRNA, complete cds. 11/11 None
SNAP00000011218 ENSEMBL cdna:SNAP chromosome:CEL140:III:8952864:8958550:-1 11/11 None
GENEFINDER00000011236 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8952864:8956089:-1 11/11 None
ZK643.5 ENSEMBL cdna:known chromosome:CEL140:III:8952810:8956101:-1 gene:ZK643.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8952859-8956085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK643.5
Entrez Gene 176263 Entrez gene
SwissProt P30651 EMBL-EBI
WormBase CE24732 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77474 Hypothetical protein ZK643.5 [Caenorhabditis elegans] ref|NP_498979.1| ZK643.5 [Caenorhabditis elegans] sp|P30651|YOW5_CAEEL Hypothetical protein ZK643.5 in chromosome III 1.0E-171
blast S23243 hypothetical protein ZK643.5 - Caenorhabditis elegans 1.0E-168
blast CAA77472 Hypothetical protein ZK643.6 [Caenorhabditis elegans] ref|NP_498981.1| ZK643.6 [Caenorhabditis elegans] sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 6.0E-89
blast CAE62708 Hypothetical protein CBG06862 [Caenorhabditis briggsae] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 0.033
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.8E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.6E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.6E-4
Sequence
Target Sequence 
>C. ELEGANS:186981_S_AT
agagacctcgtgaagatcgtgatcgaaaggattatagaagagatggtagaagagatggaa
gacgagatgacagaaaacgtcatgatgatcgtagaagagactcttatcatcgagattctg
acaaggacatcaaacgtagaaaagagcaaagtaaacattccgcgatggaaagtgcaaagg
ctcttggtttatcaaatgattacattgatcaagtaaatgagcaaaagcgaaagcgtgagg
agattgttcgtaagaaagaggagagaagacatgctccagtttctgaaaagaaagaagtcc
caactacagtgtctacaaatacatcttctgcagcctatgccaattcgaaagacaaaacaa
aggcatatctggcagtaaacgttactggagtccaacaacttccaaccgccgtaaaaaaga
ttgaagctattgccagtgagctgggtccgatcaagaaatgctggagatcggatgaagatg
ttgtttcaatcatcttcaatgctcacgacaaggccaaagacttcatgctaaagcacaatg
gaaaagtcctctctggcctgcgaataactgtttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGACCTCGTGAAGATCGTGATCG 569 67 863 Antisense
GAGACTCTTATCATCGAGATTCTGA 570 393 959 Antisense
AGAGCAAAGTAAACATTCCGCGATG 484 69 1005 Antisense
AAGTGCAAAGGCTCTTGGTTTATCA 289 159 1032 Antisense
GTCTACAAATACATCTTCTGCAGCC 406 469 1173 Antisense
TCTTCTGCAGCCTATGCCAATTCGA 498 617 1186 Antisense
ACTGGAGTCCAACAACTTCCAACCG 688 95 1246 Antisense
CCAGTGAGCTGGGTCCGATCAAGAA 151 273 1295 Antisense
TTCAATGCTCACGACAAGGCCAAAG 246 685 1357 Antisense
GGCCAAAGACTTCATGCTAAAGCAC 670 541 1374 Antisense
TCTGGCCTGCGAATAACTGTTTCCC 232 607 1414 Antisense
Sequence Source Affymetrix Proprietary Database