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[186980_at]

Description Y47G6A.15 /REP_DB=WormBase Gene ID /WP=CE24359 /TR=Q9N3T4 /GB=AAF60662.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 95      4grp_total > 37      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 142
(2.7)
P 		134.6
(2)
A 		84.6
(-3)
A 		144.6
(3)
P 		60
B 160.5
(3)
P 		121
(-2.8)
A 		119.9
(-3)
A 		120.2
(-3)
P 		41
C 132.2
(0.8)
P 		162.2
(3)
A 		79.9
(-3)
A 		123.7
(0.2)
P 		82
avr 144.9
(3) 		139.3
(2.3) 		94.8
(-3) 		129.5
(1.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 236.4
(-0.5)
P 		147.7
(-2)
A 		88.5
(-3)
P 		278.4
(0.2)
P 		445.7
(3)
P 		345.4
(1.3)
P 		357
B 183.3
(-1.6)
P 		93.1
(-3)
P 		108.4
(-2.8)
P 		416.9
(2.1)
P 		437.2
(2.4)
P 		477.8
(3)
P 		385
C 194.7
(-1.4)
P 		90.1
(-3)
A 		119.6
(-2.6)
A 		294.2
(0.1)
P 		447.4
(2.4)
P 		484.2
(3)
P 		394
avr 204.8
(-1.2) 		110.3
(-2.9) 		105.5
(-3) 		329.8
(1) 		443.4
(3) 		435.8
(2.9) 		338
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 51.7
(3)
P 		29.2
(-1.4)
A 		22.1
(-2.8)
A 		21.2
(-3)
P 		31
B 51.2
(3)
P 		29.9
(-2)
A 		27.8
(-2.5)
A 		25.6
(-3)
P 		26
C 43.8
(2.3)
P 		46.6
(3)
A 		27.8
(-1.4)
A 		20.9
(-3)
P 		26
avr 48.9
(3) 		35.2
(-0.1) 		25.9
(-2.2) 		22.6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 43.6
(-1.7)
P 		52.5
(-1.3)
A 		19.3
(-3)
P 		70.6
(-0.3)
P 		134.5
(3)
P 		84.1
(0.4)
P 		115
B 63.8
(-1.5)
P 		31
(-2.8)
P 		26.3
(-3)
P 		110.4
(0.3)
P 		177.6
(3)
P 		178.2
(3)
P 		152
C 72.2
(-1)
P 		27.5
(-3)
A 		30.4
(-2.9)
A 		59.2
(-1.6)
P 		144.8
(2.2)
P 		162.1
(3)
P 		135
avr 59.9
(-1.4) 		37
(-2.4) 		25.3
(-3) 		80.1
(-0.4) 		152.3
(3) 		141.5
(2.5) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.209
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.15 NCBI
Target Description Y47G6A.15 /REP_DB=WormBase Gene ID /WP=CE24359 /TR=Q9N3T4 /GB=AAF60662.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026590, NM_001026589
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026589 NCBI Caenorhabditis elegans Y47G6A.15a (Y47G6A.15) mRNA, complete cds. None
NM_001026590 NCBI Caenorhabditis elegans Y47G6A.15b (Y47G6A.15) mRNA, complete cds. None
SNAP00000033975 ENSEMBL cdna:SNAP chromosome:CEL140:I:3469556:3492215:-1 None
GENEFINDER00000034081 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3473076:3476292:-1 None
Y47G6A.15a ENSEMBL cdna:known chromosome:CEL140:I:3472984:3476312:-1 gene:Y47G6A.15 None
Y47G6A.15b ENSEMBL cdna:known chromosome:CEL140:I:3472997:3476292:-1 gene:Y47G6A.15 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3472617-3476292(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y47G6A.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491169 Y47G6A.16 [Caenorhabditis elegans] gb|AAF60663.2| Hypothetical protein Y47G6A.16 [Caenorhabditis elegans] 0.0
blast CAE68962 Hypothetical protein CBG14942 [Caenorhabditis briggsae] 0.0
blast NP_001021760 Y47G6A.15a [Caenorhabditis elegans] 1.0E-132
blast NP_001021761 Y47G6A.15b [Caenorhabditis elegans] gb|AAU20833.1| Hypothetical protein Y47G6A.15b [Caenorhabditis elegans] 1.0E-126
blast NP_001021761 Y47G6A.15b [Caenorhabditis elegans] gb|AAU20833.1| Hypothetical protein Y47G6A.15b [Caenorhabditis elegans] 1.0E-112
blast NP_001021761 Y47G6A.15b [Caenorhabditis elegans] gb|AAU20833.1| Hypothetical protein Y47G6A.15b [Caenorhabditis elegans] 1.0E-110
blast NP_001021760 Y47G6A.15a [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.6E-7
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 9.8E-9
Sequence
Target Sequence 
>C. ELEGANS:186980_AT
ctaacatcctcggacgcgaatcttgatagagcaaaggacgaagttgagacagccaacaga
cgtcagaaaagagcagaagatgacgccaaagatgctcgtgatgaacttgaaaaggaaaag
aacgccaatagggcaaacaaagcccttgtggatgaattgcgaaacgctgctgcacagacg
acaaacgaaatgagaagtctccgaaaccgcctggatgaatgcaataatcagagaaatgga
cagacgacaaccacaacacaagatggttatccgtttgtgtcgaatcagcagaatcagcca
agagcatcaaatactaatcaaggattggacagagttgacgtcatttttgtgagctcttca
gtcaaacattcccccatccattcaatcatgaaatttcaactgattcttcttcttcttctt
ctccaaattctgattattttcacggctctcagcggctcggctccagtcaaatgcacatgc
aacgtggatccggacactggcattgcgtcgacgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAACATCCTCGGACGCGAATCTTG 662 225 379 Antisense
GAAACGCTGCTGCACAGACGACAAA 368 357 539 Antisense
GTCTCCGAAACCGCCTGGATGAATG 282 465 575 Antisense
GGTTATCCGTTTGTGTCGAATCAGC 47 507 643 Antisense
TGAGCTCTTCAGTCAAACATTCCCC 636 569 728 Antisense
TTCCCCCATCCATTCAATCATGAAA 95 699 747 Antisense
AAATTTCAACTGATTCTTCTTCTTC 48 117 769 Antisense
ATTCTGATTATTTTCACGGCTCTCA 622 9 805 Antisense
TCGGCTCCAGTCAAATGCACATGCA 18 607 835 Antisense
TGCAACGTGGATCCGGACACTGGCA 98 577 856 Antisense
GACACTGGCATTGCGTCGACGATTT 605 367 871 Antisense
Sequence Source Affymetrix Proprietary Database