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[186979_at]

Description Y57A10C.10 /REP_DB=WormBase Gene ID /WP=CE18422 /TR=O62494 /GB=CAA19552.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 4.8
(-2.6)
A 		8.2
(-0.9)
A 		3.9
(-3)
A 		16.2
(3)
A 		12
B 7.8
(-2.3)
A 		15
(-1)
A 		4.3
(-3)
A 		36
(3)
A 		32
C 4.4
(-2.3)
A 		5.6
(-1.8)
A 		2.5
(-3)
A 		17.7
(3)
A 		15
avr 5.7
(-2.4) 		9.6
(-1.2) 		3.6
(-3) 		23.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.6
(-0)
A 		9.3
(-0.8)
A 		6.3
(-2.5)
A 		5.5
(-3)
A 		6.5
(-2.4)
A 		15.8
(3)
A 		10
B 5.7
(-1.4)
A 		6
(-1.1)
A 		4.2
(-3)
A 		8.6
(1.6)
A 		5.4
(-1.7)
A 		9.9
(3)
A 		6
C 3.6
(-1.4)
A 		4.3
(0.1)
A 		3.7
(-1.2)
A 		3.6
(-1.4)
A 		2.9
(-3)
A 		5.6
(3)
A 		3
avr 6.6
(-1) 		6.5
(-1.1) 		4.7
(-3) 		5.9
(-1.7) 		4.9
(-2.8) 		10.4
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.7
(-0)
A 		1.8
(0.4)
A 		1
(-3)
A 		2.4
(3)
A 		1
B 2.5
(-1.7)
A 		3.7
(-0.6)
A 		1
(-3)
A 		7.7
(3)
A 		7
C 1.4
(-1.6)
A 		1.6
(-1)
A 		0.9
(-3)
A 		3
(3)
A 		2
avr 1.9
(-1.4) 		2.4
(-0.5) 		1
(-3) 		4.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2
(-1.6)
A 		3.3
(1.6)
A 		1.4
(-3)
A 		1.4
(-3)
A 		2
(-1.6)
A 		3.9
(3)
A 		3
B 2
(-0.8)
A 		2
(-0.8)
A 		1
(-3)
A 		2.3
(-0.1)
A 		2.2
(-0.3)
A 		3.7
(3)
A 		3
C 1.4
(0.5)
A 		1.3
(0)
A 		0.9
(-2)
A 		0.7
(-3)
A 		0.9
(-2)
A 		1.9
(3)
A 		1
avr 1.8
(-1) 		2.2
(0.1) 		1.1
(-3) 		1.5
(-1.9) 		1.7
(-1.3) 		3.2
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2901
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.10 NCBI
Target Description Y57A10C.10 /REP_DB=WormBase Gene ID /WP=CE18422 /TR=O62494 /GB=CAA19552.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064242 NCBI Caenorhabditis elegans Y57A10C.10 (Y57A10C.10) mRNA, complete cds. 11/11 None
Y57A10C.10 ENSEMBL cdna:known chromosome:CEL140:II:12439510:12441167:-1 gene:Y57A10C.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005457 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12439506-12441164(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10C.10
Entrez Gene 190353 Entrez gene
SwissProt O62494 EMBL-EBI
WormBase CE18422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19552 Hypothetical protein Y57A10C.10 [Caenorhabditis elegans] ref|NP_496643.1| Y57A10C.10 [Caenorhabditis elegans] 1.0E-149
blast CAE73509 Hypothetical protein CBG20967 [Caenorhabditis briggsae] 7.0E-71
blast CAB03477 Hypothetical protein W05H5.1 [Caenorhabditis elegans] ref|NP_496645.1| W05H5.1 [Caenorhabditis elegans] 3.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 0.018
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 5.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496643.1 4 6-28,80-102,122-144,193-215
Y57A10C.10 4 6-28,80-102,122-144,193-215
Sequence
Target Sequence 
>C. ELEGANS:186979_AT
cttcatcgacacagtgctcgcaatgtgcacattcgaatacgagccacacctgaattgctc
ttcaatcggttgcatggtcaacgacctgttcagaacttactggggagcttcgaatatgac
ttgcggaataattattgtggttatgagcgtgtttgtgttcttcaaagtacagaagctcga
acgggaaagtgggacaatcgggggaagtaagccggcgaagaggtcactgtatactgtaga
ctactctactgtgatattccagatagtgtccaaaaagttccgtcaagcaaatcatacgac
atgtggcatcctgctgagctccctattctgtctgacaatcccatccttgctcatttctct
cgtcgagacatttgtcggattttcaatattcgatcagtttggcccaatctatgcggcttc
tctgctcactaatgaagggaggagggaagtagaaattgcaattctaattagattcagtgt
ggcggagggtggtcgcaagggagatcaaacaaataaaaatgtaaaagattttgatctaat
agattgttacatcaccggcacggggtacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCATCGACACAGTGCTCGCAATG 191 221 282 Antisense
GAGCCACACCTGAATTGCTCTTCAA 334 385 322 Antisense
GGTCAACGACCTGTTCAGAACTTAC 476 503 357 Antisense
GTAAGCCGGCGAAGAGGTCACTGTA 641 459 488 Antisense
TAGACTACTCTACTGTGATATTCCA 262 653 518 Antisense
TACGACATGTGGCATCCTGCTGAGC 73 647 576 Antisense
TATTCTGTCTGACAATCCCATCCTT 82 665 605 Antisense
TTGCTCATTTCTCTCGTCGAGACAT 288 703 628 Antisense
AGTTTGGCCCAATCTATGCGGCTTC 164 61 677 Antisense
CGGCTTCTCTGCTCACTAATGAAGG 199 243 695 Antisense
GTTACATCACCGGCACGGGGTACGT 480 445 827 Antisense
Sequence Source Affymetrix Proprietary Database