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[186978_at]

Description Y113G7B.19 /REP_DB=WormBase Gene ID /WP=CE23299 /TR=Q9NAL2 /GB=CAB76742.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 48.5
(-0.6)
A 		14.7
(-3)
A 		59.8
(0.2)
A 		98.8
(3)
A 		84
B 19.5
(-3)
A 		64.4
(3)
A 		58.7
(2.2)
A 		61.8
(2.7)
A 		45
C 63.3
(-1.9)
A 		59.3
(-2.1)
A 		42.6
(-3)
A 		159.8
(3)
P 		117
avr 43.8
(-3) 		46.1
(-2.8) 		53.7
(-2.1) 		106.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 12
(-2.2)
A 		45.6
(3)
A 		17.4
(-1.4)
A 		16.5
(-1.5)
A 		6.9
(-3)
A 		39
(2)
A 		39
B 47.9
(-0.6)
A 		47
(-0.7)
A 		54.5
(0.1)
A 		80.7
(3)
A 		36.6
(-1.8)
A 		25.9
(-3)
A 		55
C 19.3
(-1.3)
A 		56.3
(3)
A 		47.1
(1.9)
A 		7.7
(-2.6)
A 		4.5
(-3)
A 		42.1
(1.4)
A 		52
avr 26.4
(-1.1) 		49.6
(3) 		39.7
(1.2) 		35
(0.4) 		16
(-3) 		35.7
(0.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 17.7
(3)
A 		3.2
(-3)
A 		15.6
(2.1)
A 		14.5
(1.7)
A 		15
B 6.2
(-3)
A 		15.9
(3)
A 		13.6
(1.6)
A 		13.2
(1.3)
A 		10
C 20.9
(0)
A 		17
(-1.9)
A 		14.8
(-3)
A 		26.9
(3)
P 		12
avr 14.9
(-0.2) 		12
(-3) 		14.7
(-0.4) 		18.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.2
(-3)
A 		16.2
(3)
A 		3.8
(-2.3)
A 		4.2
(-2.1)
A 		2.1
(-3)
A 		9.5
(0.1)
A 		14
B 16.7
(0.6)
A 		15.6
(0.1)
A 		13.2
(-1.2)
A 		21.4
(3)
A 		14.9
(-0.3)
A 		9.6
(-3)
A 		12
C 7.2
(-0.8)
A 		17.2
(3)
A 		12
(1)
A 		1.6
(-3)
A 		1.5
(-3)
A 		14.1
(1.8)
A 		16
avr 8.7
(-1.5) 		16.3
(3) 		9.7
(-0.9) 		9.1
(-1.3) 		6.2
(-3) 		11.1
(-0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13898
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.19 NCBI
Target Description Y113G7B.19 /REP_DB=WormBase Gene ID /WP=CE23299 /TR=Q9NAL2 /GB=CAB76742.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y113G7B.19
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y113G7B.19 Y113G7B.19 /REP_DB=WormBase Gene ID /WP=CE23299 /TR=Q9NAL2 /GB=CAB76742.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024716 1/11 Cross Hyb Matching Probes None
SNAP00000024717 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024722 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009497 1/11 Cross Hyb Matching Probes None
F49F1.13 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:186978_AT
actctgtcaccaacaataccataaagttttggtttgaaaagttcacgaaaaagaactacg
gtctcaaaaaccaagatacggtcgccctcaacaacgtcatgcgaactttctgcgactctc
aagcatccccaaacaaccatcatcaaccatctccgcgaaactggaagggtgccaaaactc
ggtcaactcgttcctcacaaaatgtccgatttttgaaaaaattgcgttgtaacctctctc
tttcgctgctcactaggaaacgaacgacggactgggttaaggataccattactggagatg
agaaatgggtactgtatgttaaccatacaaggaaaaaaagagggtcccggtcaaggaaac
cgcaaaacctgacctcaaaagaaaactttacgagaaaaatagacggagccaccatcaacg
ctgatctatactgcactcaattggaaaagatggtccatgctcaccgactacatcgcccta
gaggatcaaaattgttgatgctacttgacaacgcaagacctcatacagctttgaagaccc
tccagaagctccagacactcggaatccaacttccgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTGTCACCAACAATACCATAAA 690 99 131 Antisense
TCAAAAACCAAGATACGGTCGCCCT 169 627 194 Antisense
ACAACGTCATGCGAACTTTCTGCGA 471 111 221 Antisense
TCAACCATCTCCGCGAAACTGGAAG 268 631 273 Antisense
AAAATTGCGTTGTAACCTCTCTCTT 662 133 348 Antisense
AAATAGACGGAGCCACCATCAACGC 173 113 527 Antisense
ATCAACGCTGATCTATACTGCACTC 376 27 544 Antisense
CGCTGATCTATACTGCACTCAATTG 661 253 549 Antisense
AAAAGATGGTCCATGCTCACCGACT 378 131 575 Antisense
TGATGCTACTTGACAACGCAAGACC 236 567 626 Antisense
GACACTCGGAATCCAACTTCCGTTG 45 367 684 Antisense
Sequence Source Affymetrix Proprietary Database