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[186977_at]

Description ZK643.1 /REP_DB=WormBase Gene ID /WP=CE00440 /TR=SW:P30647 /GB=CAA77470.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 06      4grp_high_8_8 > 32      6grp_total > 07      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 245.6
(3)
P 		78.7
(-2.4)
A 		59.6
(-3)
A 		70.2
(-2.7)
P 		186
B 209.9
(3)
P 		94.8
(-2.3)
P 		89.9
(-2.6)
P 		80.7
(-3)
P 		129
C 215.1
(3)
P 		57.8
(-3)
A 		76.7
(-2.3)
P 		134.7
(-0.1)
P 		157
avr 223.5
(3) 		77.1
(-2.9) 		75.4
(-3) 		95.2
(-2.2) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 252.4
(3)
P 		133.2
(-1.1)
P 		103.3
(-2.1)
P 		91.5
(-2.5)
P 		94
(-2.4)
P 		77.1
(-3)
P 		175
B 246.4
(3)
P 		133.9
(-0.6)
P 		121.3
(-1)
P 		83
(-2.2)
P 		70.4
(-2.6)
P 		58.1
(-3)
P 		188
C 208.9
(3)
P 		139.2
(0.1)
P 		116.1
(-0.9)
P 		118.9
(-0.8)
P 		65.6
(-3)
M 		84
(-2.2)
P 		143
avr 235.9
(3) 		135.4
(-0.7) 		113.6
(-1.5) 		97.8
(-2.1) 		76.7
(-2.9) 		73.1
(-3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 89.4
(3)
P 		17.1
(-2.5)
A 		15.6
(-2.6)
A 		10.3
(-3)
P 		79
B 66.9
(3)
P 		23.4
(-2.3)
P 		20.8
(-2.6)
P 		17.2
(-3)
P 		50
C 71.2
(3)
P 		16.6
(-3)
A 		26.7
(-1.9)
P 		22.7
(-2.3)
P 		55
avr 75.8
(3) 		19
(-2.8) 		21
(-2.6) 		16.7
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 46.5
(2.8)
P 		47.4
(3)
P 		22.5
(-2.2)
P 		23.2
(-2.1)
P 		28.4
(-1)
P 		18.8
(-3)
P 		29
B 85.7
(3)
P 		44.6
(-0.9)
P 		29.5
(-2.3)
P 		22
(-3)
P 		28.6
(-2.4)
P 		21.7
(-3)
P 		64
C 77.4
(3)
P 		42.5
(-0.7)
P 		29.5
(-2.1)
P 		23.9
(-2.7)
P 		21.2
(-3)
M 		28.1
(-2.3)
P 		56
avr 69.9
(3) 		44.8
(-0.2) 		27.2
(-2.5) 		23
(-3) 		26.1
(-2.6) 		22.9
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186977_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6629
Sequence Type Exemplar sequence
Representative Public ID ZK643.1 NCBI
Target Description ZK643.1 /REP_DB=WormBase Gene ID /WP=CE00440 /TR=SW:P30647 /GB=CAA77470.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066576 NCBI Caenorhabditis elegans ZK643.1 (ZK643.1) mRNA, complete cds. 11/11 None
SNAP00000011216 ENSEMBL cdna:SNAP chromosome:CEL140:III:8934140:8935323:1 11/11 None
GENEFINDER00000011234 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8934140:8936562:1 11/11 None
ZK643.1 ENSEMBL cdna:known chromosome:CEL140:III:8934140:8935323:1 gene:ZK643.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8934135-8935319(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK643.1
Entrez Gene 191372 Entrez gene
SwissProt P30647 EMBL-EBI
WormBase CE00440 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE62706 Hypothetical protein CBG06858 [Caenorhabditis briggsae] 0.0
blast CAA77470 Hypothetical protein ZK643.1 [Caenorhabditis elegans] ref|NP_498977.1| ZK643.1 [Caenorhabditis elegans] sp|P30647|YOW1_CAEEL Hypothetical protein ZK643.1 in chromosome III 1.0E-167
blast CAA77470 Hypothetical protein ZK643.1 [Caenorhabditis elegans] ref|NP_498977.1| ZK643.1 [Caenorhabditis elegans] sp|P30647|YOW1_CAEEL Hypothetical protein ZK643.1 in chromosome III 1.0E-164
blast CAE62706 Hypothetical protein CBG06858 [Caenorhabditis briggsae] 1.0E-157
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 2.0E-13
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 7.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 8.9E-30
Pfam IPR000698 EMBL-EBI Arrestin 3.4E-8
Sequence
Target Sequence 
>C. ELEGANS:186977_AT
aattcgaattcctctaaactgtccgagcagttatgaaagtcaatttggaagcatacgata
tcaaatgaaagtcgagctaagagcaagtactgatcaagcatcatgttccgaggtattccc
actagttattctaacacgttcattttttgatgacgttccactgaatgcaatgtctccaat
tgatttcaaagacgaggtagatttcacttgttgtactcttccgtttggctgtgtttcact
aaatatgtctcttacaagaactgcctttagaattggagagtcaatagaagcagttgtaac
gattaacaatcgaacacggaaaggattgaaagaagttgctcttcagttaatcatgaaaac
acaatttgaagccaggagtcgatatgagcatgttaatgagaagaagctcgctgagcaact
tattgaaatggttcctcttggagcagttaaatccaggtgtagaatggagttcgaaaaatg
tctgttacggatcccagacgcagctccaccaactcagaattacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGAATTCCTCTAAACTGTCCG 284 173 282 Antisense
CATGTTCCGAGGTATTCCCACTAGT 508 209 383 Antisense
CATTTTTTGATGACGTTCCACTGAA 455 215 422 Antisense
GTTCCACTGAATGCAATGTCTCCAA 704 439 436 Antisense
AGATTTCACTTGTTGTACTCTTCCG 30 65 480 Antisense
TTCCGTTTGGCTGTGTTTCACTAAA 424 697 500 Antisense
GTCTCTTACAAGAACTGCCTTTAGA 433 469 528 Antisense
GAAGTTGCTCTTCAGTTAATCATGA 186 337 613 Antisense
GAAATGGTTCCTCTTGGAGCAGTTA 517 361 706 Antisense
GTCTGTTACGGATCCCAGACGCAGC 17 471 761 Antisense
AGCTCCACCAACTCAGAATTACAAT 263 81 783 Antisense
Sequence Source Affymetrix Proprietary Database