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[186976_s_at]

Description Y116A8C.38 /REP_DB=WormBase Gene ID /WP=CE23343 /TR=Q9U2T8 /GB=CAB55139.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 3.2
(-3)
A 		16
(-1.6)
A 		27.7
(-0.2)
A 		56.2
(3)
A 		53
B 3.7
(-0.3)
A 		4.5
(0.9)
A 		2
(-3)
A 		5.8
(3)
A 		4
C 3.6
(-3)
A 		31.4
(-1)
A 		9.3
(-2.6)
A 		88.9
(3)
P 		85
avr 3.5
(-3) 		17.3
(-1.2) 		13
(-1.8) 		50.3
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 6.9
(-3)
A 		6.1
(-3)
A 		42.5
(-1)
A 		13
(-2.6)
A 		44.3
(-0.9)
A 		114.9
(3)
P 		109
B 4.3
(-3)
A 		5.4
(-2.9)
A 		6
(-2.9)
A 		6.8
(-2.9)
A 		51.6
(-0.4)
P 		112.8
(3)
P 		109
C 6.8
(-2.9)
A 		5.8
(-3)
A 		8
(-2.8)
A 		38.9
(-0.1)
A 		74.7
(3)
P 		58.4
(1.6)
P 		69
avr 6
(-3) 		5.8
(-3) 		18.8
(-2.1) 		19.6
(-2.1) 		56.9
(0.4) 		95.4
(3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.1
(-3)
A 		3.5
(-1)
A 		7.2
(2.2)
A 		8.2
(3)
A 		7
B 1.2
(3)
A 		1.1
(2.1)
A 		0.5
(-3)
A 		1.2
(3)
A 		1
C 1.2
(-3)
A 		9
(0.4)
A 		3.2
(-2.1)
A 		15
(3)
P 		14
avr 1.2
(-3) 		4.5
(-0.1) 		3.6
(-0.9) 		8.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.2
(-2.8)
A 		9.3
(-1.2)
A 		3.3
(-2.6)
A 		13.4
(-0.3)
A 		28
(3)
P 		27
B 1.5
(-3)
A 		1.8
(-2.9)
A 		1.4
(-3)
A 		1.8
(-2.9)
A 		21
(-0.1)
P 		42
(3)
P 		41
C 2.5
(-2.8)
A 		1.8
(-3)
A 		2
(-2.9)
A 		7.8
(-1.4)
A 		24.2
(3)
P 		19.5
(1.7)
P 		22
avr 1.8
(-3) 		1.9
(-3) 		4.2
(-2.5) 		4.3
(-2.5) 		19.5
(0.8) 		29.8
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186976_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8825
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.38 NCBI
Target Description Y116A8C.38 /REP_DB=WormBase Gene ID /WP=CE23343 /TR=Q9U2T8 /GB=CAB55139.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070623(11), NM_070638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070623 NCBI Caenorhabditis elegans Y116A8C.24 (Y116A8C.24) mRNA, complete cds. 11/11 A 
NM_070638 NCBI Caenorhabditis elegans Y116A8C.38 (Y116A8C.38) mRNA, complete cds. 11/11 A 
SNAP00000004097 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17068818:17070822:-1 11/11 None
SNAP00000004110 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17131540:17133572:1 11/11 None
GENEFINDER00000004175 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17131540:17133544:1 11/11 None
GENEFINDER00000004191 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17068818:17070822:-1 11/11 None
Y116A8C.24 ENSEMBL cdna:known chromosome:CEL140:IV:17068818:17070822:-1 gene:Y116A8C.24 11/11 A 
Y116A8C.38 ENSEMBL cdna:known chromosome:CEL140:IV:17131502:17133572:1 gene:Y116A8C.38 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17131545-17133550(+) 100.0 100.0
chrIV:17068823-17070828(-) 99.36 99.36
Public Domain and Genome References
Gene Title

Ensembl Y116A8C.24
Y116A8C.38
Entrez Gene 178481 Entrez gene
178492 Entrez gene
SwissProt Q9U2U8 EMBL-EBI
Q9U2T8 EMBL-EBI
WormBase CE23332 Wormbase
CE33848 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55129 Hypothetical protein Y116A8C.24 [Caenorhabditis elegans] ref|NP_503024.1| Y116A8C.24 [Caenorhabditis elegans] 0.0
blast CAB55139 Hypothetical protein Y116A8C.38 [Caenorhabditis elegans] ref|NP_503039.2| Y116A8C.38 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-54
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-54
Sequence
Target Sequence 
>C. ELEGANS:186976_S_AT
taaagagcccaaacttcctgttcgttggatgtctccagaattggttgacactcctgatgc
attcagtaaaatgtcggatatgtggtcgctgggaattcttgcatatgagatcttcacaaa
tgctacaaaaccatttttcaatctcgacgacactgacgtaatgcaaacagtcaaatcagg
aaaacatccaccgcttcctttatcaatggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGAGCCCAAACTTCCTGTTCGT 136 641 1080 Antisense
AACTTCCTGTTCGTTGGATGTCTCC 147 139 1091 Antisense
GGATGTCTCCAGAATTGGTTGACAC 187 515 1106 Antisense
TGGTTGACACTCCTGATGCATTCAG 471 551 1121 Antisense
GTAAAATGTCGGATATGTGGTCGCT 408 461 1145 Antisense
GTGGTCGCTGGGAATTCTTGCATAT 39 489 1161 Antisense
ATGAGATCTTCACAAATGCTACAAA 195 45 1184 Antisense
AAACCATTTTTCAATCTCGACGACA 27 125 1207 Antisense
ATCTCGACGACACTGACGTAATGCA 456 31 1220 Antisense
AAATCAGGAAAACATCCACCGCTTC 559 117 1252 Antisense
TCCACCGCTTCCTTTATCAATGGGA 339 587 1266 Antisense
Sequence Source Affymetrix Proprietary Database