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[186975_at]

Description T05G5.7 /REP_DB=WormBase Gene ID /WP=CE00319 /TR=SW:P34560 /GB=CAA81592.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 02      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 446
1 2 3 4 range
A 103.6
(-2.3)
P 		64.1
(-3)
A 		108.3
(-2.3)
A 		425.6
(3)
P 		362
B 98.5
(-2.9)
A 		94.2
(-3)
A 		106.6
(-2.8)
P 		509.7
(3)
P 		416
C 96.1
(-2.7)
P 		103.5
(-2.5)
A 		75.9
(-3)
A 		432.6
(3)
P 		357
avr 99.4
(-2.8) 		87.3
(-3) 		96.9
(-2.8) 		456
(3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2771
1 2 3 4 5 6 range
A 176.8
(-2.8)
P 		103.4
(-3)
P 		99.4
(-3)
P 		347.4
(-2.4)
P 		1303.1
(-0.2)
P 		2664.5
(3)
P 		2565
B 158.8
(-2.8)
P 		100.9
(-3)
A 		166.6
(-2.8)
P 		361.2
(-2.3)
P 		1235
(0.1)
P 		2267.3
(3)
P 		2166
C 174.3
(-2.8)
P 		126.3
(-2.9)
P 		101.4
(-3)
P 		497.9
(-2.1)
P 		1466.2
(-0)
P 		2870.3
(3)
P 		2769
avr 170
(-2.9) 		110.2
(-3) 		122.5
(-3) 		402.2
(-2.3) 		1334.8
(-0) 		2600.7
(3) 		2491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 37.7
(-0)
P 		13.9
(-3)
A 		28.3
(-1.2)
A 		62.3
(3)
P 		48
B 31.4
(-2.4)
A 		23.3
(-3)
A 		24.7
(-2.9)
P 		108.6
(3)
P 		85
C 31.8
(-2.3)
P 		29.8
(-2.6)
A 		26.5
(-3)
A 		72.9
(3)
P 		46
avr 33.6
(-1.9) 		22.3
(-3) 		26.5
(-2.6) 		81.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 939
1 2 3 4 5 6 range
A 32.6
(-2.9)
P 		36.8
(-2.9)
P 		21.6
(-3)
P 		88.1
(-2.4)
P 		393.2
(0.6)
P 		648.7
(3)
P 		627
B 55.2
(-2.8)
P 		33.6
(-3)
A 		40.5
(-2.9)
P 		95.7
(-2.5)
P 		501.8
(0.5)
P 		845.5
(3)
P 		812
C 64.6
(-2.8)
P 		38.6
(-2.9)
P 		25.8
(-3)
P 		100.1
(-2.5)
P 		474.4
(-0.1)
P 		960.9
(3)
P 		935
avr 50.8
(-2.8) 		36.3
(-2.9) 		29.3
(-3) 		94.6
(-2.5) 		456.5
(0.2) 		818.4
(3) 		789
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6270
Sequence Type Exemplar sequence
Representative Public ID T05G5.7 NCBI
Target Description T05G5.7 /REP_DB=WormBase Gene ID /WP=CE00319 /TR=SW:P34560 /GB=CAA81592.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066758 NCBI Caenorhabditis elegans T05G5.7 (T05G5.7) mRNA, complete cds. 11/11 None
SNAP00000019883 ENSEMBL cdna:SNAP chromosome:CEL140:III:9757721:9761125:1 9/11 None
GENEFINDER00000019885 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9758802:9760173:1 11/11 None
T05G5.7 ENSEMBL cdna:known chromosome:CEL140:III:9758802:9760284:1 gene:T05G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9758797-9760169(+) 97.62 100.0
Public Domain and Genome References
Gene Title
Ensembl T05G5.7
Entrez Gene 176379 Entrez gene
SwissProt P34560 EMBL-EBI
WormBase CE00319 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA81592 Hypothetical protein T05G5.7 [Caenorhabditis elegans] ref|NP_499159.1| T05G5.7 [Caenorhabditis elegans] sp|P34560|YNP7_CAEEL Hypothetical protein T05G5.7 in chromosome III 1.0E-153
blast CAE65112 Hypothetical protein CBG09977 [Caenorhabditis briggsae] 1.0E-108
blast CAA81592 Hypothetical protein T05G5.7 [Caenorhabditis elegans] ref|NP_499159.1| T05G5.7 [Caenorhabditis elegans] sp|P34560|YNP7_CAEEL Hypothetical protein T05G5.7 in chromosome III 1.0E-108
blast CAE65112 Hypothetical protein CBG09977 [Caenorhabditis briggsae] 1.0E-93
blast CAE72294 Hypothetical protein CBG19424 [Caenorhabditis briggsae] 1.0E-52
Sequence
Target Sequence 
>C. ELEGANS:186975_AT
gatgacttgtgatcttctctggagaatgtgccgcttctgccacgaactttcgacgacgat
gagcggagagcagcgacgaaagatgctgatcgaaggacgcgactacggattggaagccat
ggatcttgatccatcaagcttccttgccgctaaatggactgccatcatgttcggacttgt
tgtcgatcaactgccaactaaggagaagatcaatgacggtggacggctcaaggacatgct
cgacaaggctctcgaattggatccaaccgactttgctcttctccatcttcgtgctcgctt
ctcttacaccatcgcgaacctttcatggcttgaaagaaaagcagcttcaatgctctacag
cgaagttccaaaagcaacgatcgacgacgctctcgtcgacttcaaagccgcctacaacca
aaacgctgattggatcgagaatttgctgttcctgtcgaaatgtcatcttgccaagaagga
gaagcagcaagcacgtgagatgctgaacaaggcgatcgtcttacctgccgcttcatcgaa
tgatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGACTTGTGATCTTCTCTGGAGA 94 413 306 Antisense
CTTCTGCCACGAACTTTCGACGACG 229 221 339 Antisense
CTGCCATCATGTTCGGACTTGTTGT 303 237 464 Antisense
GACGGTGGACGGCTCAAGGACATGC 373 377 520 Antisense
CAAGGACATGCTCGACAAGGCTCTC 653 183 534 Antisense
CACCATCGCGAACCTTTCATGGCTT 608 201 612 Antisense
GATCGACGACGCTCTCGTCGACTTC 305 417 684 Antisense
GATCGAGAATTTGCTGTTCCTGTCG 585 417 738 Antisense
GTTCCTGTCGAAATGTCATCTTGCC 565 441 753 Antisense
GAACAAGGCGATCGTCTTACCTGCC 280 353 810 Antisense
ACCTGCCGCTTCATCGAATGATGCT 112 89 828 Antisense
Sequence Source Affymetrix Proprietary Database