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[186971_at]

Description C23G10.11 /REP_DB=WormBase Gene ID /WP=CE04057 /TR=Q9GYR3 /GB=AAF99877.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 47      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 321.6
(3)
P 		5.4
(-2.9)
A 		2.4
(-3)
A 		46.3
(-2.2)
A 		319
B 241.6
(3)
P 		5.5
(-2.9)
A 		2.1
(-3)
A 		2.1
(-3)
A 		240
C 285.3
(3)
P 		2.8
(-3)
A 		5.9
(-2.9)
A 		8.2
(-2.9)
A 		283
avr 282.8
(3) 		4.6
(-3) 		3.5
(-3) 		18.9
(-2.7) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1150
1 2 3 4 5 6 range
A 7
(-3)
A 		241
(-1.8)
P 		1094.2
(2.7)
P 		1157.3
(3)
P 		506.1
(-0.4)
P 		39.4
(-2.8)
A 		1150
B 16.3
(-3)
A 		172.3
(-1.9)
P 		833.5
(3)
P 		503.3
(0.6)
P 		640
(1.6)
P 		49.2
(-2.8)
A 		817
C 38.6
(-3)
A 		176.5
(-2.1)
P 		1043.4
(3)
P 		765.9
(1.4)
P 		875.8
(2)
P 		32
(-3)
A 		1011
avr 20.6
(-3) 		196.6
(-1.9) 		990.4
(3) 		808.8
(1.9) 		674
(1) 		40.2
(-2.9) 		970
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 117.1
(3)
P 		1.2
(-3)
A 		0.6
(-3)
A 		6.8
(-2.7)
A 		117
B 77
(3)
P 		1.4
(-2.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		77
C 94.4
(3)
P 		0.8
(-3)
A 		2.1
(-2.9)
A 		1.4
(-3)
A 		94
avr 96.2
(3) 		1.1
(-3) 		1.1
(-3) 		2.9
(-2.9) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 1.3
(-3)
A 		85.7
(-1.3)
P 		238.3
(1.9)
P 		293.5
(3)
P 		152.7
(0.1)
P 		9.6
(-2.8)
A 		292
B 5.7
(-3)
A 		57.4
(-1.8)
P 		202.4
(1.6)
P 		133.3
(0)
P 		260
(3)
P 		18.3
(-2.7)
A 		254
C 14.3
(-2.9)
A 		53.8
(-2.1)
P 		265.6
(2.6)
P 		154
(0.2)
P 		283.4
(3)
P 		10.7
(-3)
A 		273
avr 7.1
(-3) 		65.6
(-1.5) 		235.4
(3) 		193.6
(1.9) 		232
(2.9) 		12.9
(-2.8) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7211
Sequence Type Exemplar sequence
Representative Public ID C23G10.11 NCBI
Target Description C23G10.11 /REP_DB=WormBase Gene ID /WP=CE04057 /TR=Q9GYR3 /GB=AAF99877.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065953 NCBI Caenorhabditis elegans C23G10.11 (C23G10.11) mRNA, complete cds. 11/11 None
SNAP00000025626 ENSEMBL cdna:SNAP chromosome:CEL140:III:6215227:6215469:-1 11/11 None
GENEFINDER00000025638 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6215227:6215682:-1 11/11 None
C23G10.11 ENSEMBL cdna:known chromosome:CEL140:III:6215102:6215481:-1 gene:C23G10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6215225-6215468(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23G10.11
Entrez Gene 182816 Entrez gene
SwissProt Q9GYR3 EMBL-EBI
WormBase CE04057 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99877 Hypothetical protein C23G10.11 [Caenorhabditis elegans] ref|NP_498354.1| C23G10.11 [Caenorhabditis elegans] 1.0E-20
blast AAF99877 Hypothetical protein C23G10.11 [Caenorhabditis elegans] ref|NP_498354.1| C23G10.11 [Caenorhabditis elegans] 2.0E-20
blast CAE56539 Hypothetical protein CBG24266 [Caenorhabditis briggsae] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498354.1 1 5-24
C23G10.11 1 5-24
SNAP00000025626 1 5-24
GENEFINDER00000025638 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:186971_AT
tcctactcatcttggttgtcattttgtcagaatgcgaagctagcacactccgtgatatgt
tcactaaaaacatcaaaaagcgtcaggaaaccactggtggaatgcaagctgcttactcga
agcttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTACTCATCTTGGTTGTCATTTT 192 593 35 Antisense
ATCTTGGTTGTCATTTTGTCAGAAT 346 31 43 Antisense
AGAATGCGAAGCTAGCACACTCCGT 542 75 63 Antisense
CGAAGCTAGCACACTCCGTGATATG 364 253 69 Antisense
GCTAGCACACTCCGTGATATGTTCA 52 303 73 Antisense
GCACACTCCGTGATATGTTCACTAA 273 317 77 Antisense
ACATCAAAAAGCGTCAGGAAACCAC 87 105 104 Antisense
AAAGCGTCAGGAAACCACTGGTGGA 527 123 111 Antisense
ACCACTGGTGGAATGCAAGCTGCTT 492 85 124 Antisense
GGTGGAATGCAAGCTGCTTACTCGA 1 499 130 Antisense
CAAGCTGCTTACTCGAAGCTTCTCC 612 185 139 Antisense
Sequence Source Affymetrix Proprietary Database