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[186970_at]

Description C17H12.11 /REP_DB=WormBase Gene ID /WP=CE16871 /TR=O45082 /GB=AAC02589.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 15      6grp_total > 92      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 97.2
(-2.4)
P 		79.7
(-3)
P 		99.8
(-2.3)
A 		256.8
(3)
P 		177
B 109.2
(-0.7)
P 		74.8
(-3)
P 		146.5
(1.8)
P 		165.3
(3)
P 		91
C 86.6
(-3)
P 		109.6
(-2.2)
P 		85.9
(-3)
P 		265.4
(3)
P 		180
avr 97.7
(-2.6) 		88
(-3) 		110.7
(-2) 		229.2
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 194.1
(1)
P 		156
(-1.1)
P 		120.6
(-3)
P 		138.8
(-2)
P 		230.4
(3)
P 		154.5
(-1.1)
P 		110
B 124.8
(-1.3)
P 		165.4
(1.2)
P 		129.1
(-1)
M 		96.3
(-3)
P 		195.7
(3)
P 		104.8
(-2.5)
P 		99
C 132.7
(-0.6)
P 		132.1
(-0.6)
P 		94.7
(-3)
P 		188.3
(3)
P 		115.4
(-1.7)
P 		102.4
(-2.5)
P 		94
avr 150.5
(0.3) 		151.2
(0.3) 		114.8
(-3) 		141.1
(-0.6) 		180.5
(3) 		120.6
(-2.5) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 35.4
(2.3)
P 		17.3
(-3)
P 		26.1
(-0.4)
A 		37.6
(3)
P 		20
B 34.8
(2.9)
P 		18.5
(-3)
P 		33.9
(2.5)
P 		35.2
(3)
P 		17
C 28.7
(-3)
P 		31.5
(-2)
P 		30
(-2.5)
P 		44.8
(3)
P 		16
avr 33
(0.8) 		22.4
(-3) 		30
(-0.3) 		39.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 35.8
(-1.7)
P 		55.5
(1.1)
P 		26.3
(-3)
P 		35.2
(-1.8)
P 		69.5
(3)
P 		37.6
(-1.4)
P 		43
B 43.4
(-1)
P 		55
(0.3)
P 		31.4
(-2.3)
M 		25.5
(-3)
P 		79.5
(3)
P 		39.1
(-1.5)
P 		54
C 49.2
(3)
P 		40.3
(0.9)
P 		24.1
(-3)
P 		37.9
(0.3)
P 		37.4
(0.2)
P 		34.3
(-0.6)
P 		25
avr 42.8
(-0.3) 		50.3
(1) 		27.3
(-3) 		32.9
(-2) 		62.1
(3) 		37
(-1.3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9787
Sequence Type Exemplar sequence
Representative Public ID C17H12.11 NCBI
Target Description C17H12.11 /REP_DB=WormBase Gene ID /WP=CE16871 /TR=O45082 /GB=AAC02589.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068643 NCBI Caenorhabditis elegans C17H12.11 (C17H12.11) mRNA, complete cds. 11/11 None
C17H12.11 ENSEMBL cdna:known chromosome:CEL140:IV:6804763:6805986:1 gene:C17H12.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015110 5/11 Cross Hyb Matching Probes None
GENEFINDER00000015126 5/11 Cross Hyb Matching Probes None
GENEFINDER00000015129 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6804768-6805992(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.11
Entrez Gene 182757 Entrez gene
SwissProt O45082 EMBL-EBI
WormBase CE16871 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02589 Hypothetical protein C17H12.11 [Caenorhabditis elegans] ref|NP_501044.1| C17H12.11 [Caenorhabditis elegans] 1.0E-109
blast CAE61474 Hypothetical protein CBG05367 [Caenorhabditis briggsae] 6.0E-28
blast CAE54927 Hypothetical protein Y106G6D.8 [Caenorhabditis elegans] ref|NP_001021706.1| Y106G6D.8 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:186970_AT
gggtgttctagttttttctgtaatggtataagaaatagatgtatggagactgatcttctc
ggaatgaaaggaaaattgtgttgctgtaacgatcgccactattgcaattccgaatcactt
catttttcaattttcttcgtgtttcttctagaagctcaaaaatcaccggagaagcttgga
gatgttgaaacgaatggaaaagacattgtaaagatgccagcaacaaatttaacgactcca
aattccgatgcaacaccgccagtggtaaatgatgatcagtctactggagaagcatcatct
tcaagattccagccaacaactattgccacagcaattatgactttaattttttgtagactg
cgtctcatttatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGTTCTAGTTTTTTCTGTAATG 168 497 226 Antisense
ATTGTGTTGCTGTAACGATCGCCAC 248 5 300 Antisense
AACGATCGCCACTATTGCAATTCCG 299 145 313 Antisense
GCAATTCCGAATCACTTCATTTTTC 132 323 329 Antisense
TTCAATTTTCTTCGTGTTTCTTCTA 397 685 351 Antisense
GCCAGCAACAAATTTAACGACTCCA 61 281 441 Antisense
AACGACTCCAAATTCCGATGCAACA 403 145 456 Antisense
GATGCAACACCGCCAGTGGTAAATG 318 413 472 Antisense
ATCAGTCTACTGGAGAAGCATCATC 376 29 500 Antisense
GATTCCAGCCAACAACTATTGCCAC 105 433 530 Antisense
TTGTAGACTGCGTCTCATTTATTTT 68 707 576 Antisense
Sequence Source Affymetrix Proprietary Database