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[186969_at]

Description Y116A8C.29 /REP_DB=WormBase Gene ID /WP=CE23336 /TR=Q9U2U2 /GB=CAB55135.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 12      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1068
1 2 3 4 range
A 868.6
(-0.2)
P 		576.3
(-2.3)
P 		480.5
(-3)
P 		1300.1
(3)
P 		820
B 793.6
(-1.2)
P 		598.1
(-2.5)
P 		526.5
(-3)
P 		1402.8
(3)
P 		876
C 886.3
(-0.5)
P 		505.1
(-2.7)
P 		446.6
(-3)
P 		1514.7
(3)
P 		1068
avr 849.5
(-0.6) 		559.8
(-2.5) 		484.5
(-3) 		1405.9
(3) 		921

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 793.2
(3)
P 		765.3
(2.6)
P 		780
(2.8)
P 		617.7
(0.4)
P 		537.4
(-0.7)
P 		380.9
(-3)
P 		412
B 793.4
(2.2)
P 		838.4
(3)
P 		801.3
(2.3)
P 		557
(-2.1)
P 		546.2
(-2.3)
P 		508.8
(-3)
P 		330
C 862
(3)
P 		818.9
(2.3)
P 		722.4
(0.6)
P 		553.6
(-2.3)
P 		511.3
(-3)
P 		584.4
(-1.7)
P 		351
avr 816.2
(3) 		807.5
(2.8) 		767.9
(2.1) 		576.1
(-1.4) 		531.6
(-2.3) 		491.4
(-3) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 316.3
(3)
P 		125.1
(-3)
P 		125.6
(-3)
P 		190.3
(-1)
P 		191
B 253.1
(1.4)
P 		147.7
(-2.1)
P 		122
(-3)
P 		298.9
(3)
P 		177
C 293.4
(3)
P 		145.2
(-3)
P 		155.7
(-2.6)
P 		255.4
(1.5)
P 		148
avr 287.6
(3) 		139.3
(-2.8) 		134.4
(-3) 		248.2
(1.5) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 146.2
(-1.2)
P 		272.2
(3)
P 		169.9
(-0.4)
P 		156.7
(-0.9)
P 		162.2
(-0.7)
P 		92.7
(-3)
P 		180
B 276.1
(2.9)
P 		279.1
(3)
P 		194.6
(-0.9)
P 		147.5
(-3)
P 		221.9
(0.4)
P 		189.7
(-1.1)
P 		132
C 319.5
(3)
P 		249.9
(1)
P 		183.9
(-0.9)
P 		111.3
(-3)
P 		165.4
(-1.4)
P 		195.6
(-0.6)
P 		208
avr 247.3
(2.1) 		267.1
(3) 		182.8
(-0.9) 		138.5
(-3) 		183.2
(-0.9) 		159.3
(-2) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8700
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.29 NCBI
Target Description Y116A8C.29 /REP_DB=WormBase Gene ID /WP=CE23336 /TR=Q9U2U2 /GB=CAB55135.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070629(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070629 NCBI Caenorhabditis elegans Y116A8C.29 (Y116A8C.29) mRNA, complete cds. 10/11 None
GENEFINDER00000004198 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17093991:17095198:1 10/11 None
Y116A8C.29 ENSEMBL cdna:known chromosome:CEL140:IV:17094037:17095217:1 gene:Y116A8C.29 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17094042-17095204(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.29
Entrez Gene 191005 Entrez gene
SwissProt Q9U2U2 EMBL-EBI
WormBase CE35648 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55135 Hypothetical protein Y116A8C.29 [Caenorhabditis elegans] ref|NP_503030.2| Y116A8C.29 [Caenorhabditis elegans] 5.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503030.2 1 5-27
Y116A8C.29 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186969_AT
gactctccacaacattgcattgcaccttctcccggtttttattttcgctattgtaatttc
tcataattctgatcttcgtgtgtcggaaagcagactcaaagattatttcaaggttctcat
cgagaagatcaagccaaatgtcactcgcatcccggaaatcgagttctgcgacaaatcccc
gtcaatgtgcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCTCCACAACATTGCATTGCAC 18 375 15 Antisense
CACAACATTGCATTGCACCTTCTCC 256 195 22 Antisense
ATTTTCGCTATTGTAATTTCTCATA 221 15 55 Antisense
ATAATTCTGATCTTCGTGTGTCGGA 170 27 77 Antisense
TCGTGTGTCGGAAAGCAGACTCAAA 54 605 90 Antisense
AGATTATTTCAAGGTTCTCATCGAG 16 67 114 Antisense
GATCAAGCCAAATGTCACTCGCATC 678 421 141 Antisense
TGTCACTCGCATCCCGGAAATCGAG 190 555 153 Antisense
GCATCCCGGAAATCGAGTTCTGCGA 134 311 161 Antisense
AAATCGAGTTCTGCGACAAATCCCC 439 117 170 Antisense
GACAAATCCCCGTCAATGTGCAATG 141 367 184 Antisense
Sequence Source Affymetrix Proprietary Database