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[186968_at]

Description Y18D10A.10 /REP_DB=WormBase Gene ID /WP=CE21406 /TR=Q9XW21 /GB=CAA22313.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 64.3
(-3)
A 		85.3
(-0.2)
A 		108.7
(3)
A 		86.8
(0)
A 		44
B 112.2
(-0.5)
A 		200
(3)
A 		112.4
(-0.4)
A 		47.5
(-3)
A 		153
C 73.1
(-2.7)
A 		124.2
(3)
A 		122.3
(2.8)
A 		70.6
(-3)
A 		54
avr 83.2
(-1.7) 		136.5
(3) 		114.5
(1.1) 		68.3
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 102.8
(3)
A 		94.6
(2.5)
A 		4.8
(-3)
A 		93.1
(2.4)
A 		97.3
(2.7)
A 		86.5
(2)
A 		98
B 129.7
(3)
A 		18.1
(-3)
A 		75.6
(0.1)
A 		52.7
(-1.1)
A 		84.4
(0.6)
A 		108.5
(1.9)
A 		112
C 97.1
(-1.3)
A 		88.5
(-1.9)
A 		165.6
(3)
A 		97
(-1.4)
A 		92.1
(-1.7)
A 		71.1
(-3)
A 		95
avr 109.9
(3) 		67.1
(-3) 		82
(-0.9) 		80.9
(-1.1) 		91.3
(0.4) 		88.7
(0) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 23.4
(1.1)
A 		18.5
(-0.8)
A 		28.4
(3)
A 		12.7
(-3)
A 		16
B 35.8
(0.9)
A 		49.4
(3)
A 		26
(-0.6)
A 		10.1
(-3)
A 		39
C 24.2
(-0.6)
A 		35.7
(1.7)
A 		42.6
(3)
A 		11.9
(-3)
A 		31
avr 27.8
(1.2) 		34.5
(3) 		32.3
(2.4) 		11.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 18.9
(0.3)
A 		33.6
(3)
A 		1
(-3)
A 		23.6
(1.2)
A 		29.4
(2.2)
A 		21.1
(0.7)
A 		33
B 45.1
(3)
A 		6
(-3)
A 		18.3
(-1.1)
A 		14
(-1.8)
A 		34.3
(1.3)
A 		40.5
(2.3)
A 		39
C 36
(1.4)
A 		27
(-1)
A 		42.2
(3)
A 		19.5
(-3)
A 		29.8
(-0.3)
A 		23.8
(-1.9)
A 		23
avr 33.3
(3) 		22.2
(-1.7) 		20.5
(-2.4) 		19
(-3) 		31.2
(2.1) 		28.5
(1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.539
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.10 NCBI
Target Description Y18D10A.10 /REP_DB=WormBase Gene ID /WP=CE21406 /TR=Q9XW21 /GB=CAA22313.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060847 NCBI Caenorhabditis elegans Y18D10A.10 (Y18D10A.10) mRNA, complete cds. 11/11 None
SNAP00000000416 ENSEMBL cdna:SNAP chromosome:CEL140:I:12867608:12873540:1 11/11 None
GENEFINDER00000000462 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12867620:12869318:1 11/11 None
Y18D10A.10 ENSEMBL cdna:known chromosome:CEL140:I:12867620:12869318:1 gene:Y18D10A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12867550-12869249(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.10
Entrez Gene 189475 Entrez gene
SwissProt Q9XW21 EMBL-EBI
WormBase CE21406 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22313 Hypothetical protein Y18D10A.10 [Caenorhabditis elegans] ref|NP_493248.1| Y18D10A.10 [Caenorhabditis elegans] 2.0E-91
blast CAA22313 Hypothetical protein Y18D10A.10 [Caenorhabditis elegans] ref|NP_493248.1| Y18D10A.10 [Caenorhabditis elegans] 8.0E-91
blast CAA22323 Hypothetical protein Y18D10A.12 [Caenorhabditis elegans] ref|NP_493250.1| Y18D10A.12 [Caenorhabditis elegans] 4.0E-49
blast CAA22323 Hypothetical protein Y18D10A.12 [Caenorhabditis elegans] ref|NP_493250.1| Y18D10A.12 [Caenorhabditis elegans] 6.0E-49
blast CAE17978 Hypothetical protein Y18D10A.24 [Caenorhabditis elegans] ref|NP_001021724.1| Y18D10A.24 [Caenorhabditis elegans] 1.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493248.1 1 5-27
Y18D10A.10 1 5-27
SNAP00000000416 1 7-29
GENEFINDER00000000462 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186968_AT
acgtccgccagtatcaagagaacccgaatgtccaagtgattggttgtcgtttgacagacc
tcagggagtctggtgtgtcaaggtcttctatgaatcactcactcagcccatcgccgagag
taggtgccaggcacaaggggccacattgtccggataccagaatgccaatgagcgaatgca
agtttcatacgctgctcgtacacttacaaaccagaatggaggtggcttagccgaagtttg
ggttggagcctatagaaaagctagatgtccaaataaaccttcatgtacccctcttgacac
tttcgaatggactgatggacatacaactggtactgatggattccattatccgggtaccga
gccaaatggatatgtcaacgaacatggacaacaatattgtatggaaatgcatattcaccc
gagctctgacactgaagcggctcgctacggatatcatcaaggagatttggatgatatgct
ttgtgttgtaccggtcagactctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTCCGCCAGTATCAAGAGAACCC 315 95 204 Antisense
GAGTCTGGTGTGTCAAGGTCTTCTA 602 399 269 Antisense
TTCTATGAATCACTCACTCAGCCCA 507 691 289 Antisense
TCAGCCCATCGCCGAGAGTAGGTGC 521 603 306 Antisense
CAGGCACAAGGGGCCACATTGTCCG 394 207 331 Antisense
AGTTTCATACGCTGCTCGTACACTT 564 61 384 Antisense
CAAATAAACCTTCATGTACCCCTCT 346 187 473 Antisense
CCCCTCTTGACACTTTCGAATGGAC 685 261 491 Antisense
GATTCCATTATCCGGGTACCGAGCC 530 427 542 Antisense
GACACTGAAGCGGCTCGCTACGGAT 184 367 631 Antisense
TTGTGTTGTACCGGTCAGACTCTAT 647 677 684 Antisense
Sequence Source Affymetrix Proprietary Database