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[186967_s_at]

Description K07C11.10 /REP_DB=WormBase Gene ID /WP=CE07352 /TR=Q21273 /GB=AAA96182.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 21      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 185.2
(0.2)
A 		141.1
(-1.8)
A 		113.4
(-3)
A 		250
(3)
A 		137
B 153.6
(1.7)
A 		122
(-0.7)
A 		90.9
(-3)
A 		171.2
(3)
A 		80
C 147
(0.4)
A 		105.1
(-1.7)
A 		79.2
(-3)
A 		198.5
(3)
A 		119
avr 161.9
(0.6) 		122.7
(-1.5) 		94.5
(-3) 		206.6
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 209.5
(3)
A 		113.6
(-1.3)
A 		168
(1.1)
A 		128.2
(-0.7)
A 		104.4
(-1.7)
A 		76.2
(-3)
A 		133
B 194.7
(3)
A 		170.7
(1.5)
A 		133.2
(-0.9)
A 		116.6
(-2)
A 		120.7
(-1.7)
A 		101.2
(-3)
A 		94
C 190.8
(3)
A 		137.6
(-0.2)
A 		129.9
(-0.7)
A 		111.9
(-1.7)
A 		91.5
(-3)
A 		91.1
(-3)
A 		100
avr 198.3
(3) 		140.6
(-0.2) 		143.7
(-0) 		118.9
(-1.4) 		105.5
(-2.1) 		89.5
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 67.4
(3)
A 		30.6
(-2.8)
A 		29.6
(-3)
A 		36.6
(-1.9)
A 		38
B 49
(3)
A 		30.1
(-1.1)
A 		21.1
(-3)
A 		36.5
(0.3)
A 		28
C 48.7
(3)
A 		30.2
(-2.3)
A 		27.6
(-3)
A 		33.5
(-1.3)
A 		21
avr 55
(3) 		30.3
(-2.1) 		26.1
(-3) 		35.5
(-1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 38.6
(2.5)
A 		40.4
(3)
A 		36.6
(2)
A 		32.5
(0.8)
A 		31.5
(0.6)
A 		18.6
(-3)
A 		22
B 67.7
(3)
A 		56.8
(1.2)
A 		32.3
(-2.8)
A 		30.9
(-3)
A 		49
(-0)
A 		37.7
(-1.9)
A 		37
C 70.7
(3)
A 		42
(-0.6)
A 		33.1
(-1.7)
A 		22.5
(-3)
A 		29.6
(-2.1)
A 		30.5
(-2)
A 		48
avr 59
(3) 		46.4
(0.5) 		34
(-1.9) 		28.6
(-3) 		36.7
(-1.4) 		28.9
(-2.9) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186967_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11842
Sequence Type Exemplar sequence
Representative Public ID K07C11.10 NCBI
Target Description K07C11.10 /REP_DB=WormBase Gene ID /WP=CE07352 /TR=Q21273 /GB=AAA96182.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072720 NCBI Caenorhabditis elegans K07C11.10 (K07C11.10) mRNA, complete cds. 11/11 None
SNAP00000021031 ENSEMBL cdna:SNAP chromosome:CEL140:V:8228742:8229283:-1 9/11 None
GENEFINDER00000021037 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8228742:8229443:-1 11/11 None
K07C11.10 ENSEMBL cdna:known chromosome:CEL140:V:8228652:8229443:-1 gene:K07C11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8228742-8229444(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07C11.10
Entrez Gene 179203 Entrez gene
SwissProt Q21273 EMBL-EBI
WormBase CE35335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96182 Hypothetical protein K07C11.10 [Caenorhabditis elegans] ref|NP_505121.2| K07C11.10 [Caenorhabditis elegans] 1.0E-66
blast AAA96182 Hypothetical protein K07C11.10 [Caenorhabditis elegans] ref|NP_505121.2| K07C11.10 [Caenorhabditis elegans] 1.0E-64
blast AAA96182 Hypothetical protein K07C11.10 [Caenorhabditis elegans] ref|NP_505121.2| K07C11.10 [Caenorhabditis elegans] 4.0E-49
blast CAE56942 Hypothetical protein CBG24787 [Caenorhabditis briggsae] 4.0E-36
blast CAE56942 Hypothetical protein CBG24787 [Caenorhabditis briggsae] 3.0E-35
blast CAE56942 Hypothetical protein CBG24787 [Caenorhabditis briggsae] 2.0E-31
blast CAE64216 Hypothetical protein CBG08849 [Caenorhabditis briggsae] 5.0E-14
blast CAE64216 Hypothetical protein CBG08849 [Caenorhabditis briggsae] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:186967_S_AT
ggatctggtcacttttctaaatggtggtgttgacgagggagaggttgccccggcaacgga
gaagaacgagaaacaagaaaggtttattgtaatgtctcaaggcgagaagttggaagagaa
gttatttgtcgacgagtgctacttgttccaggacgaaacgttgactccgatcttctgtaa
gccaaagcttatcccattgaagaccatcactactcagaagctcgagaaaatgcagcgtga
gcagatggagagacttcaggtcccagaaggacagaaggcgagaactccggagtctgctga
ggccgagtcgccaaagagcaatgaagggccatcaacttctgagccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTGGTCACTTTTCTAAATGGT 51 513 15 Antisense
GTTGCCCCGGCAACGGAGAAGAACG 195 441 58 Antisense
TGTCGACGAGTGCTACTTGTTCCAG 174 557 141 Antisense
GACGAAACGTTGACTCCGATCTTCT 441 377 166 Antisense
GACTCCGATCTTCTGTAAGCCAAAG 203 375 177 Antisense
GCCAAAGCTTATCCCATTGAAGACC 269 277 195 Antisense
GAAGACCATCACTACTCAGAAGCTC 545 339 213 Antisense
GATGGAGAGACTTCAGGTCCCAGAA 519 407 258 Antisense
AGGCGAGAACTCCGGAGTCTGCTGA 407 53 290 Antisense
TCTGCTGAGGCCGAGTCGCCAAAGA 597 609 307 Antisense
AAGGGCCATCAACTTCTGAGCCAAA 585 159 338 Antisense
Sequence Source Affymetrix Proprietary Database