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[186965_at]

Description VW02B12L.3 /REP_DB=WormBase Gene ID /WP=CE18982 /TR=Q9XXA2 /GB=CAA20332.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 96      6grp_total > 94      4grp_total > 33      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 732
1 2 3 4 range
A 276
(-3)
P 		960.7
(2.6)
P 		819.9
(1.5)
P 		1008.2
(3)
P 		732
B 321.9
(-3)
P 		897.3
(3)
P 		894.8
(2.9)
P 		900.1
(3)
P 		578
C 283.8
(-3)
P 		797.2
(2.3)
P 		861.5
(3)
P 		752.6
(1.9)
P 		578
avr 293.9
(-3) 		885.1
(3) 		858.7
(2.7) 		887
(3) 		593

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 815
1 2 3 4 5 6 range
A 637.8
(-2.4)
P 		583.1
(-3)
P 		648.9
(-2.3)
P 		924.3
(0.7)
P 		1138.7
(3)
P 		1006.8
(1.6)
P 		556
B 510.4
(-3)
P 		663.6
(-1.9)
P 		885.4
(-0.2)
P 		996.7
(0.6)
P 		1325.6
(3)
P 		1054.3
(1)
P 		815
C 536.5
(-3)
P 		620.3
(-2.3)
P 		749.5
(-1.1)
P 		754.3
(-1.1)
P 		1213
(3)
P 		926.4
(0.5)
P 		677
avr 561.6
(-3) 		622.3
(-2.5) 		761.3
(-1.2) 		891.8
(-0) 		1225.8
(3) 		995.8
(0.9) 		664
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 100.5
(-3)
P 		208.5
(2.7)
P 		214.3
(3)
P 		147.6
(-0.5)
P 		114
B 102.7
(-3)
P 		221.6
(3)
P 		207.4
(2.3)
P 		191.8
(1.5)
P 		119
C 93.9
(-3)
P 		229.2
(0.9)
P 		300.2
(3)
P 		126.9
(-2)
P 		206
avr 99
(-3) 		219.8
(2.1) 		240.6
(3) 		155.4
(-0.6) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 117.6
(-3)
P 		207.4
(-0.6)
P 		141.3
(-2.4)
P 		234.4
(0.1)
P 		343.6
(3)
P 		245.1
(0.4)
P 		226
B 177.6
(-3)
P 		220.9
(-2.3)
P 		215
(-2.4)
P 		264
(-1.6)
P 		538.6
(3)
P 		393.2
(0.6)
P 		361
C 198.9
(-1.8)
P 		189.3
(-2.1)
P 		190.8
(-2)
P 		151.7
(-3)
P 		392.5
(3)
P 		310.1
(0.9)
P 		241
avr 164.7
(-3) 		205.9
(-2) 		182.4
(-2.6) 		216.7
(-1.8) 		424.9
(3) 		316.1
(0.5) 		260
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2907
Sequence Type Exemplar sequence
Representative Public ID VW02B12L.3 NCBI
Target Description VW02B12L.3 /REP_DB=WormBase Gene ID /WP=CE18982 /TR=Q9XXA2 /GB=CAA20332.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064037 NCBI Caenorhabditis elegans VW02B12L.3 (VW02B12L.3) mRNA, complete cds. 11/11 None
SNAP00000004851 ENSEMBL cdna:SNAP chromosome:CEL140:II:11442643:11443693:1 11/11 None
GENEFINDER00000004856 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11442643:11443693:1 11/11 None
VW02B12L.3.1 ENSEMBL cdna:known chromosome:CEL140:II:11442628:11443906:1 gene:VW02B12L.3 11/11 None
VW02B12L.3.2 ENSEMBL cdna:known chromosome:CEL140:II:11442630:11443693:1 gene:VW02B12L.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11442639-11443690(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ebp-2
Ensembl VW02B12L.3
Entrez Gene 174744 Entrez gene
SwissProt Q9XXA2 EMBL-EBI
WormBase CE18982 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8017 microtubule binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20332 Hypothetical protein VW02B12L.3 [Caenorhabditis elegans] ref|NP_496438.1| VW02B12L.3 [Caenorhabditis elegans] 1.0E-144
blast CAE59650 Hypothetical protein CBG03064 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.3E-10
Pfam IPR004953 EMBL-EBI EB1 protein 1.1E-20
Sequence
Target Sequence 
>C. ELEGANS:186965_AT
tctacaatgcgaacctgaccacggagccagaagaatatgatgcagttggtgctcgattcg
gagaggacttgcccgctctgaaaggatccacaggctctcgtccagttgctgctcctgcta
gaccggtggctgccgctccgccaaagccaaggcctgctgcgccagcggttgcggctccag
ctgtgaaagcatcagttccaccgacagttcgcaacggcacccggcccgctccagcgacat
cagccggaactcgacgcgctgacccatctgcaagcgaagaacttctcaaacaagaaatcg
agaaacacaaggccgccagtgatgaatgggagacgacggccaaggaaatggagacagaac
gagaatactactactcaattcttcagcgtgtcgaaagtcttgccaacgaagcagaggaga
gtggttccagtacggtcgacgtggcggctctgaagacgattctctacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACAATGCGAACCTGACCACGGA 113 611 350 Antisense
GATGCAGTTGGTGCTCGATTCGGAG 663 411 388 Antisense
CGATTCGGAGAGGACTTGCCCGCTC 407 247 403 Antisense
TTGCCCGCTCTGAAAGGATCCACAG 172 703 418 Antisense
TTGCGGCTCCAGCTGTGAAAGCATC 515 701 518 Antisense
GCTGACCCATCTGCAAGCGAAGAAC 569 295 607 Antisense
AATCGAGAAACACAAGGCCGCCAGT 108 161 645 Antisense
ACTACTACTCAATTCTTCAGCGTGT 420 101 716 Antisense
TCAGCGTGTCGAAAGTCTTGCCAAC 422 625 732 Antisense
GGAGAGTGGTTCCAGTACGGTCGAC 224 517 765 Antisense
GGCTCTGAAGACGATTCTCTACGCC 298 537 795 Antisense
Sequence Source Affymetrix Proprietary Database