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[186964_at] 7TM chemoreceptor, srv family

Description T13A10.12 /REP_DB=WormBase Gene ID /WP=CE07493 /TR=Q22450 /GB=AAB38127.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 18      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 4.5
(-3)
A 		9.1
(-1.9)
A 		17.8
(0.1)
A 		30
(3)
A 		26
B 21.1
(-0.7)
A 		48.2
(3)
A 		4.4
(-3)
A 		6.6
(-2.7)
A 		44
C 30.5
(-0.5)
A 		7.5
(-3)
A 		32.8
(-0.3)
A 		63.2
(3)
A 		56
avr 18.7
(-2.8) 		21.6
(-1.7) 		18.3
(-3) 		33.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 53.3
(0.2)
A 		44
(-0.6)
A 		83.6
(3)
A 		34.5
(-1.5)
A 		17.8
(-3)
A 		32.6
(-1.7)
A 		66
B 59.8
(3)
A 		12.3
(-2.1)
A 		5.4
(-2.8)
A 		11.6
(-2.2)
A 		6.1
(-2.8)
A 		4
(-3)
A 		56
C 25.8
(-1)
A 		68.5
(3)
A 		10.1
(-2.5)
A 		34.5
(-0.2)
A 		8.7
(-2.6)
A 		4.9
(-3)
A 		64
avr 46.3
(3) 		41.6
(2.2) 		33
(0.7) 		26.9
(-0.3) 		10.9
(-3) 		13.8
(-2.5) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.6
(-3)
A 		2
(-2.2)
A 		4.7
(3)
A 		4.4
(2.4)
A 		3
B 6.7
(0.1)
A 		11.9
(3)
A 		1
(-3)
A 		1.4
(-2.8)
A 		11
C 10.1
(2.2)
A 		2.1
(-3)
A 		11.4
(3)
A 		10.7
(2.5)
A 		9
avr 6.1
(3) 		5.3
(-3) 		5.7
(0) 		5.5
(-1.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.8
(-0.9)
A 		15.6
(1.8)
A 		18.2
(3)
A 		8.7
(-1.5)
A 		5.4
(-3)
A 		7.9
(-1.8)
A 		13
B 20.8
(3)
A 		4.1
(-2.1)
A 		1.3
(-3)
A 		3.1
(-2.4)
A 		2.5
(-2.6)
A 		1.5
(-2.9)
A 		20
C 9.6
(-0.5)
A 		20.9
(3)
A 		2.6
(-2.7)
A 		6.9
(-1.4)
A 		2.8
(-2.6)
A 		1.6
(-3)
A 		19
avr 13.4
(2.9) 		13.5
(3) 		7.4
(-0.7) 		6.2
(-1.4) 		3.6
(-3) 		3.7
(-2.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10600
Sequence Type Exemplar sequence
Representative Public ID T13A10.12 NCBI
Target Description T13A10.12 /REP_DB=WormBase Gene ID /WP=CE07493 /TR=Q22450 /GB=AAB38127.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068554 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-32) (srv-32) mRNA, complete cds. 11/11 None
GENEFINDER00000039103 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6277465:6284351:-1 11/11 None
T13A10.12 ENSEMBL cdna:known chromosome:CEL140:IV:6280131:6282227:-1 gene:T13A10.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039097 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6280136-6282233(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-32
Ensembl T13A10.12
Entrez Gene 188464 Entrez gene
SwissProt Q22450 EMBL-EBI
WormBase CE07493 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500955 Serpentine Receptor, class V family member (srv-32) [Caenorhabditis elegans] gb|AAB38127.1| Serpentine receptor, class v protein 32 [Caenorhabditis elegans] 0.0
blast T16856 hypothetical protein T13A10.11 - Caenorhabditis elegans 0.0
blast NP_741415 Temporarily Assigned Gene name family member (tag-32) [Caenorhabditis elegans] sp|Q27522|METN_CAEEL Probable S-adenosylmethionine synthetase T13A10.11 (Methionine adenosyltransferase) (AdoMet synthetase) gb|AAB38126.2| Temporarily assigned gene name protein 32, isoform a [Caenorhabditis elegans] 0.0
blast AAA82279 Hypothetical protein C06E7.3a [Caenorhabditis elegans] ref|NP_500871.1| C06E7.3a [Caenorhabditis elegans] sp|P50306|METL_CAEEL Probable S-adenosylmethionine synthetase C06E7.3 (Methionine adenosyltransferase) (AdoMet synthetase) 0.0
blast NP_500956 Serpentine Receptor, class V family member (srv-33) [Caenorhabditis elegans] gb|AAB38128.1| Serpentine receptor, class v protein 33 [Caenorhabditis elegans] 1.0E-122
blast AAG23478 Serpentine receptor, class v protein 24 [Caenorhabditis elegans] ref|NP_500957.1| Serpentine Receptor, class V family member (srv-24) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.3E-52
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.5E-7
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.1E-97
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 6.2E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500955.1 7 12-34,47-69,97-119,132-154,183-205,226-243,258-280
T13A10.12 7 12-34,47-69,97-119,132-154,183-205,226-243,258-280
GENEFINDER00000039103 12 15-37,50-72,101-123,136-158,187-209,230-247,262-284,468-490,513-535,599-621,636-658,671-693
Sequence
Target Sequence 
>C. ELEGANS:186964_AT
gagaaacaccttaatggcgcttattgttgtgagcttgacatgtatattgtgctccgtgct
ctatggatctctgttctactatatacggaaacatactgctggattgtcaagatccctccg
ccgagaagttcatttggctttccaagtttttgttctgctcctcgcattctttgccattct
tgtgtattactcatttcaaaattatttttcacaaactcaaaatactggcccaatattcta
catgcgtgctctgtacccaattgcaaacggacttctctcctatatcaatccgttttgcat
tctttttttgaacaaggatttggcatttcaagtgacaaaaagtttgacttgtagcaagct
gaaagtgagcgaggtccacgtatctgtgatcccatcgaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAACACCTTAATGGCGCTTATT 76 393 543 Antisense
GGCGCTTATTGTTGTGAGCTTGACA 683 541 558 Antisense
GACATGTATATTGTGCTCCGTGCTC 682 369 579 Antisense
TGCTCTATGGATCTCTGTTCTACTA 232 581 599 Antisense
TTTGGCTTTCCAAGTTTTTGTTCTG 307 659 675 Antisense
GCATTCTTTGCCATTCTTGTGTATT 674 307 706 Antisense
CGTGCTCTGTACCCAATTGCAAACG 614 245 787 Antisense
TGCAAACGGACTTCTCTCCTATATC 270 577 804 Antisense
ATCAATCCGTTTTGCATTCTTTTTT 225 27 826 Antisense
AAGTGAGCGAGGTCCACGTATCTGT 75 159 905 Antisense
ACGTATCTGTGATCCCATCGAATTC 337 95 920 Antisense
Sequence Source Affymetrix Proprietary Database