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[186963_s_at]

Description B0285.3 /REP_DB=WormBase Gene ID /WP=CE00667 /TR=SW:P46553 /GB=CAA84296.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      4grp_high_8_8 > 20      6grp_total > 56      4grp_total > 21      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 103.5
(0.8)
P 		118.8
(3)
P 		76.3
(-3)
A 		110.8
(1.9)
P 		43
B 98.8
(-2.1)
P 		128.4
(3)
P 		93.7
(-3)
P 		94.4
(-2.9)
A 		35
C 168.9
(1.7)
P 		82.2
(-3)
A 		128.4
(-0.5)
M 		192.1
(3)
P 		110
avr 123.7
(1.4) 		109.8
(-1.1) 		99.5
(-3) 		132.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 119.3
(-0.7)
P 		122.3
(-0.4)
P 		140.6
(1.6)
P 		132.6
(0.7)
P 		98.9
(-3)
M 		152.9
(3)
P 		54
B 107
(-1.4)
P 		119.3
(-0.5)
P 		138.2
(0.9)
P 		84.4
(-3)
P 		106.9
(-1.4)
P 		167.8
(3)
P 		83
C 134.3
(-0.9)
P 		150.5
(0.6)
P 		111.4
(-3)
P 		152.7
(0.8)
P 		119.2
(-2.3)
P 		177.2
(3)
P 		66
avr 120.2
(-1.8) 		130.7
(-0.7) 		130.1
(-0.7) 		123.2
(-1.5) 		108.3
(-3) 		166
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 37.7
(3)
P 		25.8
(-0.3)
P 		20
(-1.9)
A 		16.2
(-3)
P 		22
B 31.5
(2.9)
P 		31.7
(3)
P 		21.7
(-2.2)
P 		20.1
(-3)
A 		12
C 55.9
(3)
P 		23.6
(-3)
A 		44.8
(0.9)
M 		32.4
(-1.4)
P 		32
avr 41.7
(3) 		27
(-1.7) 		28.8
(-1.1) 		22.9
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 22
(-3)
P 		43.5
(3)
P 		30.6
(-0.6)
P 		33.6
(0.2)
P 		29.8
(-0.8)
M 		37.2
(1.2)
P 		22
B 37.2
(-0.8)
P 		39.7
(-0.4)
P 		33.6
(-1.3)
P 		22.4
(-3)
P 		43.4
(0.1)
P 		62.6
(3)
P 		40
C 49.8
(1.2)
P 		45.9
(0.4)
P 		28.3
(-3)
P 		30.7
(-2.5)
P 		38.6
(-1)
P 		59.3
(3)
P 		31
avr 36.3
(-1.2) 		43
(0.5) 		30.8
(-2.5) 		28.9
(-3) 		37.3
(-0.9) 		53
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186963_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7064
Sequence Type Exemplar sequence
Representative Public ID B0285.3 NCBI
Target Description B0285.3 /REP_DB=WormBase Gene ID /WP=CE00667 /TR=SW:P46553 /GB=CAA84296.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065473 NCBI Caenorhabditis elegans B0285.3 (B0285.3) mRNA, complete cds. 11/11 None
SNAP00000026082 ENSEMBL cdna:SNAP chromosome:CEL140:III:4342049:4349784:-1 9/11 None
GENEFINDER00000026104 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4342049:4343163:-1 11/11 None
B0285.3 ENSEMBL cdna:known chromosome:CEL140:III:4342015:4343163:-1 gene:B0285.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4342048-4343163(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0285.3
Entrez Gene 175560 Entrez gene
SwissProt P46553 EMBL-EBI
WormBase CE00667 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84296 Hypothetical protein B0285.3 [Caenorhabditis elegans] ref|NP_497874.1| B0285.3 [Caenorhabditis elegans] sp|P46553|YKG3_CAEEL Hypothetical protein B0285.3 in chromosome III 2.0E-30
blast CAA84296 Hypothetical protein B0285.3 [Caenorhabditis elegans] ref|NP_497874.1| B0285.3 [Caenorhabditis elegans] sp|P46553|YKG3_CAEEL Hypothetical protein B0285.3 in chromosome III 3.0E-25
Sequence
Target Sequence 
>C. ELEGANS:186963_S_AT
actacgggaataatggcggcggtcaatggcaaccacggggaaacaataattggagaccac
aaggacgaggaagaggtggtggtggatggaaaggtaacgataatcgaggaggatatcgtg
gtggaagctccaacgatggtggatggagtaatttcagagacgatggaaatctgaactttg
cgtcgccgtatcaagcaaatcgaggaaatttcagaggaaattatcgtggcggtggtggtg
gaggtggagggaatcagaacaactatggaaaccgaggaaggggacggggaggatttgata
gaggaagaggtggcggaggtggaggcaacaagaattttggcccaattgacgcgaacaaat
gtataatcccttccatgtggaataatccgtgggatgcgctcgaaaaggaatacgaacaag
aatatggagtcgcgattacagagaaagtcactgatcctagtccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACGGGAATAATGGCGGCGGTCA 177 91 17 Antisense
TAATGGCGGCGGTCAATGGCAACCA 187 635 27 Antisense
GGTGGAAGCTCCAACGATGGTGGAT 265 499 136 Antisense
ATGGAAATCTGAACTTTGCGTCGCC 296 53 179 Antisense
TGCGTCGCCGTATCAAGCAAATCGA 496 583 195 Antisense
GGAAATTATCGTGGCGGTGGTGGTG 325 527 232 Antisense
GGCCCAATTGACGCGAACAAATGTA 112 535 355 Antisense
ACAAATGTATAATCCCTTCCATGTG 606 111 371 Antisense
AATCCGTGGGATGCGCTCGAAAAGG 207 167 400 Antisense
GAATATGGAGTCGCGATTACAGAGA 464 325 436 Antisense
AGAAAGTCACTGATCCTAGTCCATC 330 73 458 Antisense
Sequence Source Affymetrix Proprietary Database