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[186962_at]

Description Y47G6A.18 /REP_DB=WormBase Gene ID /WP=CE24362 /TR=Q9N3S8 /GB=AAF60665.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 74      6grp_total > 90      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 488
1 2 3 4 range
A 621.1
(0.8)
P 		658.8
(1.5)
P 		737
(3)
P 		424.8
(-3)
P 		312
B 672.4
(-1.5)
P 		747.8
(-0.1)
P 		912.5
(3)
P 		595.2
(-3)
P 		317
C 663.6
(0.4)
P 		707.4
(1.1)
P 		822.3
(3)
P 		453.2
(-3)
P 		369
avr 652.4
(-0.1) 		704.7
(0.9) 		823.9
(3) 		491.1
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 485.2
(-3)
P 		800.5
(3)
P 		646.7
(0.1)
P 		738.2
(1.8)
P 		645.8
(0.1)
P 		736.4
(1.8)
P 		315
B 506
(-3)
P 		578.9
(-0.7)
P 		615.1
(0.5)
P 		693.3
(3)
P 		673.5
(2.4)
P 		621.7
(0.7)
P 		187
C 920.9
(3)
P 		560.4
(-3)
P 		608.6
(-2.2)
P 		669.2
(-1.2)
P 		653.8
(-1.4)
P 		596.8
(-2.4)
P 		361
avr 637.4
(-1.9) 		646.6
(-1.2) 		623.5
(-3) 		700.2
(3) 		657.7
(-0.3) 		651.6
(-0.8) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 226.1
(3)
P 		143
(-0)
P 		192.7
(1.8)
P 		62.2
(-3)
P 		164
B 214.4
(3)
P 		184.7
(1)
P 		211.4
(2.8)
P 		126.8
(-3)
P 		88
C 219.7
(1.1)
P 		203.4
(0.6)
P 		286.6
(3)
P 		76.4
(-3)
P 		210
avr 220.1
(2.6) 		177
(0.7) 		230.2
(3) 		88.5
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 89.4
(-3)
P 		284.7
(3)
P 		140.8
(-1.4)
P 		187.2
(0)
P 		194.9
(0.2)
P 		179.3
(-0.2)
P 		195
B 176.1
(-1.7)
P 		192.7
(-0.9)
P 		149.4
(-3)
P 		183.6
(-1.3)
P 		273.6
(3)
P 		231.8
(1)
P 		124
C 341.3
(3)
P 		171
(-1.9)
P 		154.9
(-2.4)
P 		134.6
(-3)
P 		211.6
(-0.8)
P 		199.8
(-1.1)
P 		207
avr 202.3
(1.1) 		216.1
(2.2) 		148.4
(-3) 		168.5
(-1.5) 		226.7
(3) 		203.6
(1.2) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.240
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.18 NCBI
Target Description Y47G6A.18 /REP_DB=WormBase Gene ID /WP=CE24362 /TR=Q9N3S8 /GB=AAF60665.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058771 NCBI Caenorhabditis elegans Y47G6A.18 (Y47G6A.18) mRNA, complete cds. 11/11 None
SNAP00000033980 ENSEMBL cdna:SNAP chromosome:CEL140:I:3508901:3514045:-1 11/11 None
GENEFINDER00000034092 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3510219:3512661:-1 9/11 None
Y47G6A.18.2 ENSEMBL cdna:known chromosome:CEL140:I:3508502:3512735:-1 gene:Y47G6A.18 11/11 None
Y47G6A.18.1 ENSEMBL cdna:known chromosome:CEL140:I:3508502:3512737:-1 gene:Y47G6A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3509713-3512661(-) 98.9 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.18
Entrez Gene 171919 Entrez gene
SwissProt Q9N3S8 EMBL-EBI
WormBase CE24362 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605960_AT similar to Golgi phosphoprotein 3 (Coat-protein GPP34) (Trans-Golgi protein GMx33) cfa
CANINE_2:CFAAFFX.28885.1.S1_S_AT similar to Golgi phosphoprotein 3 (Coat-protein GPP34) (Trans-Golgi protein GMx33) cfa
DROSOPHILA_2:1624142_A_AT dm
DROSGENOME1:151629_AT dm
DROSGENOME1:142571_AT dm
CHICKEN:GGA.12332.1.S1_AT golgi phosphoprotein 3 (coat-protein) gga
HG-U133A:217803_AT golgi phosphoprotein 3 (coat-protein) hs
HG-FOCUS:217803_AT golgi phosphoprotein 3 (coat-protein) hs
HG-U133A_2:217803_AT golgi phosphoprotein 3 (coat-protein) hs
HG-U133_PLUS_2:217803_AT golgi phosphoprotein 3 (coat-protein) hs
HU35KSUBA:RC_AA191014_AT golgi phosphoprotein 3 (coat-protein) hs
HU35KSUBA:AA452454_AT golgi phosphoprotein 3 (coat-protein) hs
U133_X3P:G11545858_3P_AT golgi phosphoprotein 3 (coat-protein) hs
HG-U95C:48994_AT golgi phosphoprotein 3 (coat-protein) hs
HG-U133_PLUS_2:236851_X_AT Golgi phosphoprotein 3 (coat-protein) hs
HG-U133B:236851_X_AT Golgi phosphoprotein 3 (coat-protein) hs
HG-U95C:55343_AT Golgi phosphoprotein 3 (coat-protein) hs
HG-U95C:60251_R_AT Golgi phosphoprotein 3 (coat-protein) hs
HG-U95E:69088_R_AT Golgi phosphoprotein 3 (coat-protein) hs
HU35KSUBD:RC_N25186_AT Golgi phosphoprotein 3 (coat-protein) hs
U133_X3P:236851_3P_X_AT Golgi phosphoprotein 3 (coat-protein) hs
U133_X3P:HS.108979.0.A1_3P_AT Golgi phosphoprotein 3 (coat-protein) hs
U133_X3P:HS.108979.0.A1_3P_S_AT Golgi phosphoprotein 3 (coat-protein) hs
MOUSE430_2:1430777_A_AT golgi phosphoprotein 3 mm
MOE430A:1430777_A_AT golgi phosphoprotein 3 mm
MOUSE430A_2:1430777_A_AT golgi phosphoprotein 3 mm
MOUSE430A_2:1420116_S_AT golgi phosphoprotein 3 mm
MOE430A:1420116_S_AT golgi phosphoprotein 3 mm
MOUSE430_2:1420116_S_AT golgi phosphoprotein 3 mm
MG-U74BV2:112236_AT golgi phosphoprotein 3 mm
MG-U74AV2:160688_AT golgi phosphoprotein 3 mm
MOE430A:1421845_AT golgi phosphoprotein 3 mm
MOUSE430A_2:1421845_AT golgi phosphoprotein 3 mm
MOUSE430_2:1421845_AT golgi phosphoprotein 3 mm
MOE430A:1450394_AT golgi phosphoprotein 3 mm
MOUSE430A_2:1450394_AT golgi phosphoprotein 3 mm
MOUSE430_2:1450394_AT golgi phosphoprotein 3 mm
MOUSE430A_2:1420117_AT Golgi phosphoprotein 3 (Golph3), mRNA mm
MOE430A:1420117_AT Golgi phosphoprotein 3 (Golph3), mRNA mm
MOUSE430_2:1420117_AT Golgi phosphoprotein 3 (Golph3), mRNA mm
MU19KSUBA:TC14863_AT Golgi phosphoprotein 3 (Golph3), mRNA mm
MU19KSUBB:TC32050_AT Golgi phosphoprotein 3 (Golph3), mRNA mm
MU19KSUBC:TC39225_AT Golgi phosphoprotein 3 (Golph3), mRNA mm
RAE230A:1369571_AT golgi phosphoprotein 3 rn
RAT230_2:1369571_AT golgi phosphoprotein 3 rn
YEAST_2:1772930_AT Non-essential protein of unknown function involved in vacuolar protein sorting; belongs to a family of cytosolic Golgi-associated proteins suggesting that it may play a role in secretion; also detected in the nucleus Sc
Protein Similarities
Method ID Description E-Value
blast NP_491172 Y47G6A.18 [Caenorhabditis elegans] gb|AAF60665.1| Hypothetical protein Y47G6A.18 [Caenorhabditis elegans] 1.0E-170
blast CAE68960 Hypothetical protein CBG14940 [Caenorhabditis briggsae] 1.0E-152
blast NP_491172 Y47G6A.18 [Caenorhabditis elegans] gb|AAF60665.1| Hypothetical protein Y47G6A.18 [Caenorhabditis elegans] 1.0E-150
blast NP_491172 Y47G6A.18 [Caenorhabditis elegans] gb|AAF60665.1| Hypothetical protein Y47G6A.18 [Caenorhabditis elegans] 1.0E-145
blast CAE68960 Hypothetical protein CBG14940 [Caenorhabditis briggsae] 1.0E-143
blast CAE68960 Hypothetical protein CBG14940 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR008628 EMBL-EBI Golgi phosphoprotein 3 1.0E-126
Pfam IPR008628 EMBL-EBI Golgi phosphoprotein 3 1.0E-126
Pfam IPR008628 EMBL-EBI Golgi phosphoprotein 3 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186962_AT
gagccaactggtgacgtcattctcgacgaggcacttcgccatatgaaggagacaaacccg
ccggagacagtgaccagctggattgaatatttgtctggagaaacgtggaatccgctgaaa
cttcgctaccaactgagaaatgttcgtgaacgactcgccaagaatcttgttgaaaagggt
gttctgacgactgataagcaaaatttcttgctttttgaaattacgacgcatccactttcg
gacggaaatcagaagacgaaattgattaaagaagtgcaagaagcggttctggggaaatgg
acgaatgatgttcatcgtatggataagaaaatgctctcgttgattgtattggctcatgct
agtgatgttcttgaaaatgcgtttgcaccgctttctgatcaagattatgaggtaaaacaa
atgctggaaatcctgtttttttctggaaaattggcgcattttgagccaaaaaatgttgca
atgaaacgagtgcgtagtctgctcgatcttgattacgaccagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAACTGGTGACGTCATTCTCG 380 385 337 Antisense
CTCGACGAGGCACTTCGCCATATGA 5 233 358 Antisense
GACAAACCCGCCGGAGACAGTGACC 626 365 387 Antisense
CTGAAACTTCGCTACCAACTGAGAA 532 237 451 Antisense
GTGAACGACTCGCCAAGAATCTTGT 9 483 482 Antisense
AAGGGTGTTCTGACGACTGATAAGC 590 159 511 Antisense
AAATTACGACGCATCCACTTTCGGA 646 113 554 Antisense
ATGCTCTCGTTGATTGTATTGGCTC 579 41 667 Antisense
AAAATGCGTTTGCACCGCTTTCTGA 117 133 710 Antisense
ACGAGTGCGTAGTCTGCTCGATCTT 607 93 822 Antisense
GCTCGATCTTGATTACGACCAGCAA 606 299 837 Antisense
Sequence Source Affymetrix Proprietary Database