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[186961_at]

Description ZK643.7 /REP_DB=WormBase Gene ID /WP=CE00445 /TR=SW:P30653 /GB=CAA77469.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 09      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 2.6
(-2.2)
A 		9.8
(3)
A 		1.5
(-3)
A 		3.4
(-1.6)
A 		8
B 3
(-3)
A 		3.8
(-2.8)
A 		15.2
(0.5)
A 		24.1
(3)
A 		21
C 3.9
(-2.8)
A 		2.5
(-2.9)
A 		1.7
(-3)
A 		55.7
(3)
A 		54
avr 3.2
(-3) 		5.4
(-2.5) 		6.1
(-2.3) 		27.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 25
(3)
A 		2.2
(-2.7)
A 		24.7
(2.9)
A 		0.9
(-3)
A 		24.6
(2.9)
A 		20.7
(1.9)
A 		24
B 26.7
(3)
A 		18.7
(1)
A 		3
(-3)
A 		3.1
(-3)
A 		3.7
(-2.8)
A 		12.3
(-0.6)
A 		24
C 0.8
(-3)
A 		25
(3)
A 		4.3
(-2.1)
A 		2.2
(-2.7)
A 		2
(-2.7)
A 		1.9
(-2.7)
A 		24
avr 17.5
(3) 		15.3
(2.1) 		10.7
(0.4) 		2.1
(-3) 		10.1
(0.1) 		11.6
(0.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-1.2)
A 		2.1
(3)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		2
B 1
(-2.9)
A 		0.9
(-3)
A 		3.5
(0.7)
A 		5.1
(3)
A 		4
C 1.3
(-2.5)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		9.4
(3)
A 		9
avr 1.1
(-3) 		1.2
(-2.8) 		1.5
(-2.4) 		5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.6
(0.7)
A 		0.8
(-2.5)
A 		5.4
(1.3)
A 		0.2
(-3)
A 		7.4
(3)
A 		5
(1)
A 		7
B 9.3
(3)
A 		6.2
(0.8)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		1.5
(-2.4)
A 		4.6
(-0.3)
A 		9
C 0.3
(-3)
A 		7.6
(3)
A 		1.1
(-2.3)
A 		0.4
(-2.9)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		7
avr 4.7
(2.7) 		4.9
(3) 		2.4
(-0.4) 		0.5
(-3) 		3.2
(0.7) 		3.4
(1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6530
Sequence Type Exemplar sequence
Representative Public ID ZK643.7 NCBI
Target Description ZK643.7 /REP_DB=WormBase Gene ID /WP=CE00445 /TR=SW:P30653 /GB=CAA77469.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066575 NCBI Caenorhabditis elegans ZK643.7 (ZK643.7) mRNA, complete cds. 11/11 None
ZK643.7 ENSEMBL cdna:known chromosome:CEL140:III:8925511:8926433:-1 gene:ZK643.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8925506-8926429(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK643.7
Entrez Gene 191376 Entrez gene
SwissProt P30653 EMBL-EBI
WormBase CE00445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77469 Hypothetical protein ZK643.7 [Caenorhabditis elegans] ref|NP_498976.1| ZK643.7 [Caenorhabditis elegans] sp|P30653|YOW7_CAEEL Hypothetical protein ZK643.7 in chromosome III 3.0E-50
Sequence
Target Sequence 
>C. ELEGANS:186961_AT
atgcatgctaatcctacagaagagacaaatattttatattttaagtttttttcaggcaga
agtattcaggtggggaataatagaaaatcttgtaaaaagcttcctgactttgagtatatt
tcaaaaggaggaatccgatgctgtataattcacttttttaaaatttattttacacctgag
atgtttttccatctcaacgattttccaaaactcgataacagtggaaatgagactttcatt
ttgtcacgttcactttgggtgcggttttttctgctggttcaacttttggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATGCTAATCCTACAGAAGAGA 675 41 13 Antisense
TCAGGCAGAAGTATTCAGGTGGGGA 636 621 64 Antisense
AAGCTTCCTGACTTTGAGTATATTT 640 149 109 Antisense
AATCCGATGCTGTATAATTCACTTT 545 167 144 Antisense
TTTTACACCTGAGATGTTTTTCCAT 69 677 180 Antisense
GTTTTTCCATCTCAACGATTTTCCA 365 447 195 Antisense
GATTTTCCAAAACTCGATAACAGTG 85 399 211 Antisense
GAGACTTTCATTTTGTCACGTTCAC 128 393 241 Antisense
TGTCACGTTCACTTTGGGTGCGGTT 95 559 254 Antisense
CACTTTGGGTGCGGTTTTTTCTGCT 603 197 263 Antisense
TTTTCTGCTGGTTCAACTTTTGGTT 238 677 279 Antisense
Sequence Source Affymetrix Proprietary Database