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[186960_s_at]

Description Y34D9B.1B /REP_DB=WormBase Gene ID /WP=CE24204 /TR=Q10662 /GB=AAF60492.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 71      6grp_total > 25      4grp_total > 10      6grp_highest_sub > 02      6grp_cgc > 33      6grp_high1_sub > 02      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 455.1
(-1.7)
P 		451.3
(-1.8)
P 		361.3
(-3)
P 		803.3
(3)
P 		442
B 402.3
(-2.6)
P 		427.1
(-2.1)
P 		384.6
(-3)
P 		658.9
(3)
P 		274
C 346.3
(-3)
P 		429.7
(-1.5)
P 		351.4
(-2.9)
P 		678.3
(3)
P 		332
avr 401.2
(-2.4) 		436
(-1.8) 		365.8
(-3) 		713.5
(3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 374.1
(-0.7)
P 		440.5
(3)
P 		424.8
(2.1)
P 		358.8
(-1.5)
P 		332
(-3)
P 		358.7
(-1.5)
P 		109
B 500.3
(3)
P 		413.2
(0.3)
P 		357.6
(-1.4)
P 		338.8
(-2)
P 		306.4
(-3)
P 		335.5
(-2.1)
P 		194
C 312.7
(-1.3)
P 		436.7
(3)
P 		333.4
(-0.6)
P 		263
(-3)
P 		337.9
(-0.4)
P 		263.1
(-3)
P 		174
avr 395.7
(1.1) 		430.1
(3) 		371.9
(-0.1) 		320.2
(-2.9) 		325.4
(-2.7) 		319.1
(-3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 165.7
(3)
P 		98
(-2.7)
P 		94.4
(-3)
P 		117.6
(-1)
P 		71
B 128.3
(1.6)
P 		105.5
(-1.1)
P 		89.1
(-3)
P 		140.4
(3)
P 		51
C 114.6
(-2.9)
P 		123.6
(3)
P 		122.5
(2.3)
P 		114.4
(-3)
P 		9
avr 136.2
(3) 		109
(-1.8) 		102
(-3) 		124.1
(0.9) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 69
(-3)
P 		156.7
(3)
P 		92.5
(-1.4)
P 		91
(-1.5)
P 		100.2
(-0.9)
P 		87.3
(-1.7)
P 		88
B 174.1
(3)
P 		137.5
(0.5)
P 		86.8
(-3)
P 		89.7
(-2.8)
P 		124.5
(-0.4)
P 		125.1
(-0.4)
P 		87
C 115.9
(1.7)
P 		133.2
(3)
P 		84.8
(-0.6)
P 		52.9
(-3)
P 		109.3
(1.2)
P 		88.1
(-0.4)
P 		80
avr 119.7
(0.9) 		142.5
(3) 		88
(-2.1) 		77.9
(-3) 		111.3
(0.1) 		100.2
(-0.9) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186960_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5
Sequence Type Exemplar sequence
Representative Public ID Y34D9B.1B NCBI
Target Description Y34D9B.1B /REP_DB=WormBase Gene ID /WP=CE24204 /TR=Q10662 /GB=AAF60492.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058395(11), NM_001026573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058395 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-1) (mig-1) mRNA, complete cds. 11/11 A 
NM_001026573 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-1) (mig-1) mRNA, complete cds. 11/11 None
Y34D9B.1a ENSEMBL cdna:known chromosome:CEL140:I:948576:957375:-1 gene:Y34D9B.1 11/11 A 
Y34D9B.1b ENSEMBL cdna:known chromosome:CEL140:I:948673:957321:-1 gene:Y34D9B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:948672-957321(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y34D9B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60492 Abnormal cell migration protein 1, isoform a [Caenorhabditis elegans] ref|NP_490796.2| abnormal cell MIGration family member (mig-1) [Caenorhabditis elegans] gb|AAC46993.1| transmembrane receptor 0.0
blast AAF60493 Abnormal cell migration protein 1, isoform b [Caenorhabditis elegans] ref|NP_001021744.1| abnormal cell MIGration family member (mig-1) [Caenorhabditis elegans] 0.0
blast CAE61302 Hypothetical protein CBG05130 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000024 EMBL-EBI Frizzled CRD region 1.0E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490796.2 7 4-21,218-240,250-272,341-363,390-409,416-438,458-480
NP_001021744.1 7 4-21,217-239,254-276,345-367,394-413,420-442,462-484
Y34D9B.1a 7 4-21,218-240,250-272,341-363,390-409,416-438,458-480
Y34D9B.1b 7 4-21,217-239,254-276,345-367,394-413,420-442,462-484
Sequence
Target Sequence 
>C. ELEGANS:186960_S_AT
gctcttgatctgtgtgtcgtggaataaggcgacaaggacatcgcatatattggacgactc
cagaacccgcgtgatcatgctcatcctgggaatcccgctggctccactaatgctcgcgct
actcgcaaaagccgtcgccgccaatcccctcaccggactctgcttcatcggagcagcaag
cccgggcaccgactggatcttcaacttctgccgggagctcattctattcctcatcagctc
cattgctctttcgtctgcttgctgccggcttctgggctctgatgagcaggatgtcaatgg
gtttgccggagtcattgcggcagtctatccgattgctggactattctacatgctttcatt
tgtgaacgatgccacccaaccgtttctctcacttgacagaagtttcaatgcggtctcggc
gaccaagttctcgtttgatctacttttgagcttcatcatgtgcgcgttttgtcttattta
cttgctgttcaagctgactagatcctcatcaaaagttagcaaagaaggatatcaaccggc
ggtgccgaaactcccgcaaccggcaattcccggcagtgtacgatcgaacacctacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTGATCTGTGTGTCGTGGAAT 364 301 975 Antisense
TATATTGGACGACTCCAGAACCCGC 572 659 1020 Antisense
TGATCATGCTCATCCTGGGAATCCC 459 565 1046 Antisense
TAATGCTCGCGCTACTCGCAAAAGC 609 635 1082 Antisense
CGGACTCTGCTTCATCGGAGCAGCA 430 243 1128 Antisense
CCGGCTTCTGGGCTCTGATGAGCAG 25 267 1239 Antisense
GGATGTCAATGGGTTTGCCGGAGTC 27 515 1263 Antisense
TGCGGCAGTCTATCCGATTGCTGGA 459 583 1290 Antisense
TGCTGGACTATTCTACATGCTTTCA 78 583 1308 Antisense
CATTTGTGAACGATGCCACCCAACC 644 209 1331 Antisense
GCAGTGTACGATCGAACACCTACGC 129 311 1547 Antisense
Sequence Source Affymetrix Proprietary Database