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[186959_at]

Description T07A5.1 /REP_DB=WormBase Gene ID /WP=CE01646 /TR=SW:Q10044 /GB=CAA88133.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 38
(-2.9)
A 		46.8
(-2.3)
A 		36.1
(-3)
A 		124.9
(3)
P 		89
B 44.9
(-0.1)
A 		49.9
(0.7)
A 		25.5
(-3)
A 		65.6
(3)
P 		40
C 51.8
(-2)
M 		44.9
(-3)
A 		52.2
(-1.9)
A 		85.3
(3)
P 		40
avr 44.9
(-2.2) 		47.2
(-2) 		37.9
(-3) 		91.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 36.1
(-0.2)
A 		14.6
(-3)
A 		51.1
(1.8)
A 		40.8
(0.4)
P 		54.1
(2.2)
M 		60.6
(3)
P 		46
B 22.3
(-3)
A 		28.5
(-1.8)
A 		42.5
(0.9)
A 		47
(1.8)
A 		31.8
(-1.2)
P 		53.5
(3)
P 		31
C 38.9
(-0.8)
A 		63.2
(1.7)
A 		18.4
(-2.9)
A 		76.2
(3)
P 		17.4
(-3)
A 		48.8
(0.2)
M 		59
avr 32.4
(-3) 		35.4
(-2.2) 		37.3
(-1.7) 		54.7
(3) 		34.4
(-2.5) 		54.3
(2.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.8
(-0)
A 		10.2
(-2.5)
A 		9.4
(-3)
A 		18.3
(3)
P 		9
B 14.3
(3)
A 		12.3
(1.6)
A 		5.9
(-3)
A 		14
(2.8)
P 		8
C 17.2
(1.9)
M 		12.9
(-3)
A 		18.2
(3)
A 		14.4
(-1.3)
P 		5
avr 15.1
(2.3) 		11.8
(-2.2) 		11.2
(-3) 		15.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.7
(-2.2)
A 		5.2
(-3)
A 		11.1
(0.2)
A 		10.3
(-0.2)
P 		16.3
(3)
M 		14.8
(2.2)
P 		11
B 7.8
(-3)
A 		9.5
(-2.2)
A 		10.3
(-1.8)
A 		12.5
(-0.7)
A 		12.9
(-0.5)
P 		20
(3)
P 		12
C 14.4
(1)
A 		19.3
(3)
A 		4.7
(-3)
A 		15.3
(1.4)
P 		5.6
(-2.6)
A 		16.4
(1.8)
M 		15
avr 9.6
(-2.4) 		11.3
(-1.1) 		8.7
(-3) 		12.7
(-0.1) 		11.6
(-0.9) 		17.1
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6354
Sequence Type Exemplar sequence
Representative Public ID T07A5.1 NCBI
Target Description T07A5.1 /REP_DB=WormBase Gene ID /WP=CE01646 /TR=SW:Q10044 /GB=CAA88133.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066877 NCBI Caenorhabditis elegans T07A5.1 (T07A5.1) mRNA, complete cds. 11/11 None
T07A5.1 ENSEMBL cdna:known chromosome:CEL140:III:10303352:10311444:-1 gene:T07A5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030110 6/11 Cross Hyb Matching Probes None
GENEFINDER00000030122 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10303347-10311440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07A5.1
Entrez Gene 188207 Entrez gene
SwissProt Q10044 EMBL-EBI
WormBase CE01646 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88133 Hypothetical protein T07A5.1 [Caenorhabditis elegans] ref|NP_499278.1| T07A5.1 [Caenorhabditis elegans] sp|Q10044|YRT1_CAEEL Hypothetical protein T07A5.1 in chromosome III 0.0
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 2.0E-36
blast CAE69205 Hypothetical protein CBG15245 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR009644 EMBL-EBI Fukutin-related 2.6E-25
Sequence
Target Sequence 
>C. ELEGANS:186959_AT
aacttcaacacattttccatagggaatcttcatatcccaagtaatatcccattgtttctc
aaaatgtgggaacgatctgaaattcggggctgcttaaatctaattgtgcacagaaatatg
acaaagagtcagcagtttaatcacgggaaagaggcagctgagaagctcgccgagttcagg
gacgtgcttttgacgttcaatatgttcgcttttttgaatggaggaactttgttaggttgg
tatcgtgaatgcggttttatacctcacactgctgacattgacttggcaatgttcgctgaa
gattttcacccagaaatcacacatttcctactgtctcggacatcttcgtttcagctattg
cgaagtctaggaatgcttaatgactcctatgaactcacggtgaccccaaaaaccgggtat
attgtgaatatggatttatttttgatgtataaggatgtgcacaaaaacggaagtgtcatc
aattgggtcggcggagcaaaaagtaggttttgtagatccactaggcaggtaggcagttcg
agtacggtaacctatggtacgaagaccacccaagtagccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCAACACATTTTCCATAGGGA 131 139 1270 Antisense
CCGAGTTCAGGGACGTGCTTTTGAC 125 263 1439 Antisense
AATGCGGTTTTATACCTCACACTGC 628 159 1517 Antisense
CTCACACTGCTGACATTGACTTGGC 472 227 1532 Antisense
AAATCACACATTTCCTACTGTCTCG 446 117 1583 Antisense
GGACATCTTCGTTTCAGCTATTGCG 625 525 1607 Antisense
TGACTCCTATGAACTCACGGTGACC 69 571 1650 Antisense
GAAGTGTCATCAATTGGGTCGGCGG 455 335 1739 Antisense
GATCCACTAGGCAGGTAGGCAGTTC 230 413 1784 Antisense
GGCAGTTCGAGTACGGTAACCTATG 45 535 1801 Antisense
TACGAAGACCACCCAAGTAGCCAAT 333 649 1827 Antisense
Sequence Source Affymetrix Proprietary Database