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[186957_at]

Description F27E5.5 /REP_DB=WormBase Gene ID /WP=CE01566 /TR=SW:Q09554 /GB=CAA88467.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 91.2
(-1.5)
A 		13.1
(-3)
A 		47.6
(-2.3)
A 		322.3
(3)
P 		309
B 102.2
(3)
P 		49.6
(-3)
A 		76
(0)
P 		75.1
(-0.1)
A 		53
C 126.3
(0.5)
A 		46.2
(-2.6)
A 		37
(-3)
A 		192.1
(3)
P 		155
avr 106.6
(-0.4) 		36.3
(-3) 		53.5
(-2.4) 		196.5
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 6.2
(-3)
A 		33.7
(-0.8)
A 		80.6
(3)
A 		32.2
(-0.9)
A 		14.5
(-2.3)
A 		26.9
(-1.3)
A 		74
B 74.5
(2.4)
A 		44
(-0.1)
A 		52.8
(0.6)
P 		7.9
(-3)
A 		82.5
(3)
A 		21.3
(-1.9)
A 		75
C 50.6
(-0.9)
A 		124
(3)
P 		24
(-2.3)
A 		73.6
(0.3)
A 		55.8
(-0.6)
A 		10.4
(-3)
A 		114
avr 43.8
(0.1) 		67.2
(3) 		52.5
(1.2) 		37.9
(-0.7) 		50.9
(0.9) 		19.5
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 33.2
(1.1)
A 		2.8
(-3)
A 		12.4
(-1.7)
A 		47.2
(3)
P 		44
B 32.6
(3)
P 		12.3
(-3)
A 		17.6
(-1.4)
P 		16
(-1.9)
A 		20
C 41.8
(3)
A 		13.3
(-2.9)
A 		12.9
(-3)
A 		32.4
(1)
P 		29
avr 35.9
(3) 		9.5
(-3) 		14.3
(-1.9) 		31.9
(2.1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 1.1
(-3)
A 		12
(1)
A 		17.5
(3)
A 		8.2
(-0.4)
A 		4.4
(-1.8)
A 		6.6
(-1)
A 		16
B 25.9
(1.5)
A 		14.7
(-0.6)
A 		12.8
(-1)
P 		2.1
(-3)
A 		33.5
(3)
A 		7.9
(-1.9)
A 		31
C 18.8
(-0.3)
A 		37.9
(3)
P 		6.1
(-2.5)
A 		14.8
(-1)
A 		18.1
(-0.5)
A 		3.5
(-3)
A 		34
avr 15.3
(0.6) 		21.5
(3) 		12.1
(-0.6) 		8.4
(-2.1) 		18.7
(1.9) 		6
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3501
Sequence Type Exemplar sequence
Representative Public ID F27E5.5 NCBI
Target Description F27E5.5 /REP_DB=WormBase Gene ID /WP=CE01566 /TR=SW:Q09554 /GB=CAA88467.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026951 NCBI Caenorhabditis elegans F27E5.8 (F27E5.8) mRNA, complete cds. 11/11 None
GENEFINDER00000023305 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10125809:10131735:-1 11/11 None
F27E5.8 ENSEMBL cdna:known chromosome:CEL140:II:10125809:10127366:-1 gene:F27E5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023296 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10125805-10131577(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27E5.8
Entrez Gene 3565659 Entrez gene
SwissProt Q5FC78 EMBL-EBI
WormBase CE37899 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88467 Hypothetical protein F27E5.5 [Caenorhabditis elegans] ref|NP_496185.2| F27E5.5 [Caenorhabditis elegans] 0.0
blast CAI46606 Hypothetical protein F27E5.8 [Caenorhabditis elegans] ref|NP_001022122.1| F27E5.8 [Caenorhabditis elegans] sp|Q5FC78|YQV8_CAEEL Hypothetical protein F27E5.8 in chromosome II 1.0E-171
blast CAI46606 Hypothetical protein F27E5.8 [Caenorhabditis elegans] ref|NP_001022122.1| F27E5.8 [Caenorhabditis elegans] sp|Q5FC78|YQV8_CAEEL Hypothetical protein F27E5.8 in chromosome II 1.0E-147
blast CAE67782 Hypothetical protein CBG13358 [Caenorhabditis briggsae] 1.0E-142
blast CAE67782 Hypothetical protein CBG13358 [Caenorhabditis briggsae] 1.0E-101
blast CAA88467 Hypothetical protein F27E5.5 [Caenorhabditis elegans] ref|NP_496185.2| F27E5.5 [Caenorhabditis elegans] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022122.1 6 30-52,72-94,115-137,168-190,224-246,273-295
F27E5.8 6 30-52,72-94,115-137,168-190,224-246,273-295
GENEFINDER00000023305 13 28-50,71-93,108-125,146-167,187-209,242-264,396-418,460-482,492-514,575-597,624-646,680-702,729-751
Sequence
Target Sequence 
>C. ELEGANS:186957_AT
gatcgtgccaaccgcatggaacatttcttactgtacccacatcttccgtgccaaatcgaa
tatttaacgccaactatgtttatgataacgatcttcattattgtgataggatttattgca
agtgttgggggaatcacgatagtatacaataaaaatatcaaaaaatacaatactagagat
atttggttcaatactgtgaaccttagtgaaagatatcagataacagaaaatattcgctca
acacacttattattcccattacttgccttaatgcttattttttcaacgctttcagtttca
gttttgatttatggagggtattgggtgtcggtgatgacaaaagagccggcaaggtttgaa
gaagttgtcaagtggtttggcaggggaggtgaagccgctcaactatttgacattataact
gcaatctatacaataagcttcccaatatgtgcatttatatgtcatccaaatctatttcga
tttctgcgaaagtttattggatggaacagttatgcggtgcggccatcgaatttgaatgaa
atcggaggcttcgagatgtcaactgctccaattcgaacacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGTGCCAACCGCATGGAACATT 128 419 1711 Antisense
GAACATTTCTTACTGTACCCACATC 526 351 1729 Antisense
CCACATCTTCCGTGCCAAATCGAAT 222 275 1747 Antisense
TTCGCTCAACACACTTATTATTCCC 441 697 1943 Antisense
TTATTATTCCCATTACTTGCCTTAA 381 679 1957 Antisense
TAATGCTTATTTTTTCAACGCTTTC 682 635 1979 Antisense
GGAGGTGAAGCCGCTCAACTATTTG 356 515 2095 Antisense
GATGGAACAGTTATGCGGTGCGGCC 442 405 2210 Antisense
TGCGGTGCGGCCATCGAATTTGAAT 385 581 2223 Antisense
CGGAGGCTTCGAGATGTCAACTGCT 600 243 2253 Antisense
GTCAACTGCTCCAATTCGAACACAA 141 465 2268 Antisense
Sequence Source Affymetrix Proprietary Database