[Home] | [Total List]

[186956_s_at]

Description Y113G7B.16 /REP_DB=WormBase Gene ID /WP=CE23296 /TR=Q9U2Y2 /GB=CAB54323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 118.9
(1.7)
A 		87.8
(-3)
A 		127.8
(3)
A 		109.9
(0.3)
A 		40
B 113.4
(-3)
A 		129.8
(-1.8)
A 		192.6
(3)
A 		125.2
(-2.1)
A 		79
C 120.3
(-0.8)
A 		107.3
(-1.4)
A 		200.4
(3)
P 		74.3
(-3)
A 		126
avr 117.5
(-1.8) 		108.3
(-2.6) 		173.6
(3) 		103.1
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 93.8
(-2.9)
A 		92.9
(-3)
A 		141.8
(3)
A 		138.4
(2.6)
A 		103.4
(-1.7)
A 		102.5
(-1.8)
A 		49
B 156.5
(3)
A 		113.2
(-1.5)
A 		154.5
(2.8)
A 		99.3
(-3)
A 		113.1
(-1.6)
A 		109.3
(-2)
P 		57
C 169.9
(3)
P 		99.6
(-2.9)
A 		98.7
(-3)
A 		141.6
(0.6)
A 		139.3
(0.4)
P 		151.7
(1.5)
P 		71
avr 140.1
(3) 		101.9
(-3) 		131.7
(1.7) 		126.4
(0.8) 		118.6
(-0.4) 		121.2
(0) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 43.3
(3)
A 		19.1
(-2.3)
A 		33.4
(0.8)
A 		16.1
(-3)
A 		27
B 36.2
(0.2)
A 		32
(-1.2)
A 		44.6
(3)
A 		26.7
(-3)
A 		18
C 39.8
(-0.1)
A 		30.8
(-1.1)
A 		69.9
(3)
P 		12.5
(-3)
A 		57
avr 39.8
(1.2) 		27.3
(-1.3) 		49.3
(3) 		18.4
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 17.3
(-3)
A 		33
(2.3)
A 		30.9
(1.6)
A 		35.1
(3)
A 		31.2
(1.7)
A 		24.9
(-0.4)
A 		18
B 54.5
(3)
A 		37.7
(-0.6)
A 		37.5
(-0.6)
A 		26.3
(-3)
A 		46
(1.2)
A 		40.7
(0.1)
P 		28
C 63
(3)
P 		30.4
(-2.2)
A 		25.1
(-3)
A 		28.5
(-2.5)
A 		45.1
(0.2)
P 		50.8
(1.1)
P 		38
avr 44.9
(3) 		33.7
(-1.5) 		31.2
(-2.5) 		30
(-3) 		40.8
(1.3) 		38.8
(0.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186956_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14333
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.16 NCBI
Target Description Y113G7B.16 /REP_DB=WormBase Gene ID /WP=CE23296 /TR=Q9U2Y2 /GB=CAB54323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075509 NCBI Caenorhabditis elegans Y113G7B.16 (Y113G7B.16) mRNA, complete cds. 11/11 A 
SNAP00000024714 ENSEMBL cdna:SNAP chromosome:CEL140:V:20224832:20273639:1 11/11 None
GENEFINDER00000024729 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20268168:20273639:1 11/11 None
Y113G7B.16 ENSEMBL cdna:known chromosome:CEL140:V:20268158:20273783:1 gene:Y113G7B.16 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20268167-20273639(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.16
Entrez Gene 180327 Entrez gene
SwissProt Q9U2Y2 EMBL-EBI
WormBase CE23296 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250700_AT expressed protein at
CANINE:1606022_AT similar to CDK5 regulatory subunit associated protein 3 isoform b cfa
CANINE_2:CFAAFFX.25715.1.S1_AT similar to CDK5 regulatory subunit associated protein 3 isoform b cfa
CANINE_2:CFAAFFX.25715.1.S1_S_AT similar to CDK5 regulatory subunit associated protein 3 isoform b cfa
DROSOPHILA_2:1639747_AT dm
DROSGENOME1:152775_AT dm
HG-U133_PLUS_2:218740_S_AT CDK5 regulatory subunit associated protein 3 hs
HG-FOCUS:218740_S_AT CDK5 regulatory subunit associated protein 3 hs
HG-U133A:218740_S_AT CDK5 regulatory subunit associated protein 3 hs
HG-U133A_2:218740_S_AT CDK5 regulatory subunit associated protein 3 hs
HU35KSUBA:R73427_AT CDK5 regulatory subunit associated protein 3 hs
HU35KSUBA:RC_AA488901_AT CDK5 regulatory subunit associated protein 3 hs
U133_X3P:G13376787_3P_A_AT CDK5 regulatory subunit associated protein 3 hs
HG-U95B:43798_S_AT CDK5 regulatory subunit associated protein 3 hs
HG-U95C:65916_I_AT CDK5 regulatory subunit associated protein 3 hs
MU11KSUBA:AA386606_S_AT CDK5 regulatory subunit associated protein 3 mm
MG-U74AV2:96155_AT CDK5 regulatory subunit associated protein 3 mm
MG-U74AV2:162005_AT CDK5 regulatory subunit associated protein 3 mm
MOE430A:1423067_AT CDK5 regulatory subunit associated protein 3 mm
MOUSE430A_2:1423067_AT CDK5 regulatory subunit associated protein 3 mm
MOUSE430_2:1423067_AT CDK5 regulatory subunit associated protein 3 mm
MU19KSUBC:TC35458_AT CDK5 regulatory subunit associated protein 3 (Cdk5rap3), mRNA mm
MU19KSUBC:TC35458_G_AT CDK5 regulatory subunit associated protein 3 (Cdk5rap3), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAB54323 Hypothetical protein Y113G7B.16 [Caenorhabditis elegans] ref|NP_507910.1| Y113G7B.16 [Caenorhabditis elegans] sp|Q9U2Y2|CK5P3_CAEEL CDK5RAP3-like protein pir||T26435 hypothetical protein Y113G7B.16 - Caenorhabditis elegans 0.0
blast CAE67421 Hypothetical protein CBG12909 [Caenorhabditis briggsae] 0.0
blast CAB54333 Hypothetical protein Y113G7B.14 [Caenorhabditis elegans] ref|NP_507903.1| Y113G7B.14 [Caenorhabditis elegans] 0.0
blast CAE67421 Hypothetical protein CBG12909 [Caenorhabditis briggsae] 1.0E-173
blast XP_785908 PREDICTED: similar to CDK5 regulatory subunit associated protein 3 [Strongylocentrotus purpuratus] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR008491 EMBL-EBI Protein of unknown function DUF773 1.0E-126
Pfam IPR000330 EMBL-EBI SNF2 related domain 7.6E-23
Pfam IPR008491 EMBL-EBI Protein of unknown function DUF773 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186956_S_AT
gctgtgaagcacgagctcatcgagcttttagcctttctctcgatgcgtttggacgatgaa
actcgagaaacgacggccgatgttctgatccgtggagccgaaaaacgtcccgatggcgtg
gcagccgttacggagaagcgcctgaagacgtggattacggaagtggaggggattttgaag
gagctggagaatccgcagaaagtgcacttgttcaagattcgtggatctccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGAAGCACGAGCTCATCGAGC 589 295 994 Antisense
GCTCATCGAGCTTTTAGCCTTTCTC 190 301 1008 Antisense
CCTTTCTCTCGATGCGTTTGGACGA 694 267 1025 Antisense
ACTCGAGAAACGACGGCCGATGTTC 410 99 1054 Antisense
GGCCGATGTTCTGATCCGTGGAGCC 325 543 1068 Antisense
GAGCCGAAAAACGTCCCGATGGCGT 383 333 1088 Antisense
ATGGCGTGGCAGCCGTTACGGAGAA 334 53 1106 Antisense
AGCCGTTACGGAGAAGCGCCTGAAG 31 81 1116 Antisense
GAAGCGCCTGAAGACGTGGATTACG 671 343 1128 Antisense
GAATCCGCAGAAAGTGCACTTGTTC 687 329 1182 Antisense
TGTTCAAGATTCGTGGATCTCCGCA 508 561 1202 Antisense
Sequence Source Affymetrix Proprietary Database