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[186953_at]

Description Y71F9AL.7 /REP_DB=WormBase Gene ID /WP=CE22861 /TR=Q9N4H9 /GB=AAF35999.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 42      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.4
(-3)
A 		4.2
(-0.5)
A 		5.3
(3)
A 		4.6
(0.8)
A 		2
B 4.2
(1)
A 		4.7
(3)
A 		4.5
(2.2)
A 		3.2
(-3)
A 		2
C 3.8
(-1.6)
A 		7.5
(3)
A 		2.7
(-3)
A 		5.5
(0.5)
A 		5
avr 3.8
(-3) 		5.5
(3) 		4.2
(-1.6) 		4.4
(-0.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.6
(1.6)
A 		7
(2.1)
A 		3
(-3)
A 		7.7
(3)
A 		3.6
(-2.2)
A 		7.4
(2.6)
A 		5
B 4.7
(-1.1)
A 		3.2
(-3)
A 		3.6
(-2.5)
A 		6
(0.6)
A 		4.4
(-1.5)
A 		7.9
(3)
A 		5
C 5.2
(2.7)
A 		5.4
(3)
A 		1.7
(-3)
A 		2.6
(-1.5)
A 		5
(2.4)
A 		3.5
(-0.1)
A 		4
avr 5.5
(1.6) 		5.2
(1.1) 		2.8
(-3) 		5.4
(1.5) 		4.3
(-0.4) 		6.3
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(1.3)
A 		0.9
(-1.3)
A 		1.4
(3)
A 		0.7
(-3)
A 		1
B 1.3
(3)
A 		1.2
(2)
A 		1
(0)
A 		0.7
(-3)
A 		1
C 1.3
(-1.2)
A 		2.2
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
avr 1.3
(2) 		1.4
(3) 		1.1
(0) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.2
(-1.1)
A 		2.5
(3)
A 		0.6
(-3)
A 		1.9
(1.1)
A 		1.1
(-1.4)
A 		1.8
(0.8)
A 		2
B 1.6
(-0.9)
A 		1.1
(-2.4)
A 		0.9
(-3)
A 		1.6
(-0.9)
A 		1.8
(-0.3)
A 		2.9
(3)
A 		2
C 1.9
(3)
A 		1.7
(2.2)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		1.6
(1.8)
A 		1.2
(0.2)
A 		2
avr 1.6
(1.3) 		1.8
(2.1) 		0.6
(-3) 		1.3
(0) 		1.5
(0.9) 		2
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186953_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.222
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.7 NCBI
Target Description Y71F9AL.7 /REP_DB=WormBase Gene ID /WP=CE22861 /TR=Q9N4H9 /GB=AAF35999.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058666 NCBI Caenorhabditis elegans Y71F9AL.7 (Y71F9AL.7) mRNA, complete cds. 11/11 None
SNAP00000005891 ENSEMBL cdna:SNAP chromosome:CEL140:I:2888865:2889356:1 9/11 None
Y71F9AL.7 ENSEMBL cdna:known chromosome:CEL140:I:2887801:2889435:1 gene:Y71F9AL.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005890 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005910 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2887800-2889356(+) 91.7 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.7
Entrez Gene 171858 Entrez gene
SwissProt Q9N4H9 EMBL-EBI
WormBase CE22861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35999 Hypothetical protein Y71F9AL.7 [Caenorhabditis elegans] ref|NP_491067.1| Y71F9AL.7 [Caenorhabditis elegans] 1.0E-143
blast AAF35999 Hypothetical protein Y71F9AL.7 [Caenorhabditis elegans] ref|NP_491067.1| Y71F9AL.7 [Caenorhabditis elegans] 3.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491067.1 1 245-267
Y71F9AL.7 1 245-267
SNAP00000005891 1 124-146
Sequence
Target Sequence 
>C. ELEGANS:186953_AT
ggcgacgaggatgatggcgacgacgaagaggacacggacagtaatatcgacgataaggaa
ctagccgacgccacaatgggcaagccgctctacaccgattcttgctctccgccaactgac
atctccgaagacccaagatctcgattcgacgacttggacggcgaattcacagacgacaat
gttcaactacaaagatatctcgagatggaagccgcagtggattacattgaaagggcgaga
ggagtttttcgtgcgaataaagagttggatccaaatcgtgaaggctcattttggaccgac
gattggaatgaaatagcggagaaggtcaggagagacaagcaatttcttaggaggacccgg
agaaattccgatgaaaatatgggatccagcgttaggttttttgaagtgtatattctctgg
ccatcatttttcttcctatccttcatcattctttttccactcatttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGACGAGGATGATGGCGACGACG 691 541 337 Antisense
GATAAGGAACTAGCCGACGCCACAA 415 419 388 Antisense
TAGCCGACGCCACAATGGGCAAGCC 367 647 398 Antisense
GACATCTCCGAAGACCCAAGATCTC 57 369 454 Antisense
GATCTCGATTCGACGACTTGGACGG 577 417 473 Antisense
TGGACGGCGAATTCACAGACGACAA 5 547 491 Antisense
GGGCGAGAGGAGTTTTTCGTGCGAA 276 493 569 Antisense
TGAAGGCTCATTTTGGACCGACGAT 152 575 615 Antisense
TGGGATCCAGCGTTAGGTTTTTTGA 214 553 716 Antisense
GTATATTCTCTGGCCATCATTTTTC 594 453 744 Antisense
ATCATTCTTTTTCCACTCATTTGTA 349 31 781 Antisense
Sequence Source Affymetrix Proprietary Database