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[186949_at]

Description F26A3.7 /REP_DB=WormBase Gene ID /WP=CE09672 /TR=SW:Q93591 /GB=CAB06545.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_high_8_8 > 0      6grp_highest_nonorm > 82      6grp_total > 86      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 394.1
(1.7)
P 		300.3
(-3)
A 		373.8
(0.7)
A 		419.3
(3)
P 		119
B 409.1
(0.9)
P 		382.2
(-0.2)
P 		461.5
(3)
P 		312.3
(-3)
P 		149
C 424.6
(1.1)
P 		294.9
(-3)
A 		327.6
(-2)
P 		486
(3)
P 		191
avr 409.3
(3) 		325.8
(-3) 		387.6
(1.4) 		405.9
(2.8) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 308.3
(-1.4)
P 		239.3
(-3)
P 		435.4
(1.6)
P 		302
(-1.5)
P 		394.3
(0.7)
P 		493.7
(3)
P 		254
B 322.2
(-2.8)
P 		311.8
(-3)
P 		424
(-0.7)
P 		405.6
(-1.1)
P 		530.7
(1.4)
P 		607.4
(3)
P 		296
C 215.4
(-3)
P 		367.3
(2)
P 		258.9
(-1.6)
P 		370.8
(2.1)
P 		285.5
(-0.7)
P 		399.5
(3)
P 		184
avr 282
(-3) 		306.1
(-2.3) 		372.8
(-0.5) 		359.5
(-0.9) 		403.5
(0.3) 		500.2
(3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 143.5
(3)
P 		65.2
(-2.7)
A 		97.7
(-0.3)
A 		61.4
(-3)
P 		82
B 130.5
(3)
P 		94.4
(-0.4)
P 		107
(0.8)
P 		66.6
(-3)
P 		64
C 140.5
(3)
P 		84.8
(-2.7)
A 		114.2
(0.3)
P 		82
(-3)
P 		59
avr 138.2
(3) 		81.5
(-2) 		106.3
(0.2) 		70
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 56.8
(-3)
P 		85.1
(-0.3)
P 		94.8
(0.6)
P 		76.6
(-1.1)
P 		119
(2.9)
P 		120.2
(3)
P 		63
B 112.1
(-2.6)
P 		103.8
(-3)
P 		103
(-3)
P 		107.4
(-2.8)
P 		215.6
(2.5)
P 		226.5
(3)
P 		124
C 79.8
(-1.8)
P 		112.1
(1.1)
P 		65.9
(-3)
P 		74.6
(-2.2)
P 		92.4
(-0.7)
P 		133.7
(3)
P 		68
avr 82.9
(-3) 		100.3
(-1.6) 		87.9
(-2.6) 		86.2
(-2.7) 		142.3
(1.6) 		160.1
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2233
Sequence Type Exemplar sequence
Representative Public ID F26A3.7 NCBI
Target Description F26A3.7 /REP_DB=WormBase Gene ID /WP=CE09672 /TR=SW:Q93591 /GB=CAB06545.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059735 NCBI Caenorhabditis elegans F26A3.7 (F26A3.7) mRNA, complete cds. 11/11 None
F26A3.7 ENSEMBL cdna:known chromosome:CEL140:I:7682882:7684247:-1 gene:F26A3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7682841-7684178(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A3.7
Entrez Gene 172526 Entrez gene
SwissProt Q93591 EMBL-EBI
WormBase CE09672 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7776.1.S1_S_AT similar to CG33332-PA cfa
DROSGENOME1:149924_AT dm
DROSOPHILA_2:1639992_AT dm
CHICKEN:GGAAFFX.12828.1.S1_AT similar to RIKEN cDNA 1200011I18 gga
HG-U133_PLUS_2:220171_X_AT KIAA1704 hs
HG-U133A:220171_X_AT KIAA1704 hs
HG-FOCUS:220171_X_AT KIAA1704 hs
HG-U133A_2:220171_X_AT KIAA1704 hs
HG-U133_PLUS_2:223606_X_AT KIAA1704 hs
HG-U133B:223606_X_AT KIAA1704 hs
HU35KSUBA:RC_AA058740_AT KIAA1704 hs
HU35KSUBB:RC_AA025399_AT KIAA1704 hs
HU35KSUBB:RC_T70045_AT KIAA1704 hs
HU35KSUBC:RC_AA405669_AT KIAA1704 hs
U133_X3P:G8923916_3P_X_AT KIAA1704 hs
U133_X3P:G8923916_3P_AT KIAA1704 hs
U133_X3P:G12005504_3P_A_AT KIAA1704 hs
U133_X3P:HS.283709.4.S1_3P_A_AT KIAA1704 hs
U133_X3P:HS.283709.3.S1_3P_AT KIAA1704 hs
U133_X3P:HS.283709.3.S1_3P_A_AT KIAA1704 hs
HG-U133_PLUS_2:226429_AT KIAA1704 hs
HG-U133B:226429_AT KIAA1704 hs
HG-U133_PLUS_2:229078_S_AT KIAA1704 hs
HG-U133B:229078_S_AT KIAA1704 hs
HG-U133_PLUS_2:229891_X_AT KIAA1704 hs
HG-U133B:229891_X_AT KIAA1704 hs
HG-U95B:54614_AT KIAA1704 hs
HG-U95B:54745_AT KIAA1704 hs
HG-U95B:58401_AT KIAA1704 hs
U133_X3P:HS.283709.4.S1_3P_X_AT KIAA1704 hs
HG-U95D:67862_AT KIAA1704 hs
MOUSE430A_2:1449857_AT RIKEN cDNA 1200011I18 gene mm
MOUSE430_2:1449857_AT RIKEN cDNA 1200011I18 gene mm
MOE430A:1449857_AT RIKEN cDNA 1200011I18 gene mm
MG-U74AV2:104759_AT RIKEN cDNA 1200011I18 gene mm
MOE430A:1454998_AT RIKEN cDNA 1200011I18 gene mm
MOUSE430A_2:1454998_AT RIKEN cDNA 1200011I18 gene mm
MOUSE430_2:1454998_AT RIKEN cDNA 1200011I18 gene mm
MU11KSUBA:AA000151_AT RIKEN cDNA 1200011I18 gene, mRNA (cDNA clone MGC:35668 IMAGE:4946215) mm
MU19KSUBB:TC26321_AT RIKEN cDNA 1200011I18 gene, mRNA (cDNA clone MGC:35668 IMAGE:4946215) mm
RG-U34A:RC_AA892960_AT similar to RIKEN cDNA 1200011I18 (predicted) rn
RAE230A:1375819_AT similar to RIKEN cDNA 1200011I18 (predicted) rn
RAT230_2:1375819_AT similar to RIKEN cDNA 1200011I18 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB01706 Hypothetical protein F26A3.7 [Caenorhabditis elegans] emb|CAB06545.1| Hypothetical protein F26A3.7 [Caenorhabditis elegans] ref|NP_492136.1| F26A3.7 [Caenorhabditis elegans] sp|Q93591|YUBO_CAEEL Hypothetical protein F26A3.7 in chromosome I 1.0E-158
blast CAE57366 Hypothetical protein CBG00310 [Caenorhabditis briggsae] 2.0E-95
blast CAG32384 hypothetical protein [Gallus gallus] ref|NP_001006270.1| hypothetical protein LOC418842 [Gallus gallus] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:186949_AT
aatcctatggtccatcgattccttcaaactttcgtcctaccgttggtccttcaattccag
gaacttttggtgatgattctgatgaagacattggcccaatgccagttgcaaaaggggatg
aagagaaagaagcaattgatcgagcatatcggatggtattacaaaaagaagcagaagacg
atgaaaagaatttccaaccaaaacgcgaagaatggatgacatcagtgccgaaaaaactag
gaaatttcggtcttggcgcgcgaactttcaaaaaaggaaccacatcagaaagggatgctt
cttgggaagatgctccaggagctaagaaaagaagaaatgaggagacaagaagtgcgagat
ctgttggaattgctgctgctgatgctagacaagctgctattgtcgcggaaaagacatctg
gaccctctcttctagaaattcatcaaaaaaagagagatgaaaaagttaaagacgcgggct
atgcacaaggagaacgccgtccgtttgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCTATGGTCCATCGATTCCTTC 59 169 281 Antisense
TCGATTCCTTCAAACTTTCGTCCTA 57 603 295 Antisense
GACATTGGCCCAATGCCAGTTGCAA 459 371 367 Antisense
TCTTGGCGCGCGAACTTTCAAAAAA 499 615 531 Antisense
GCGAGATCTGTTGGAATTGCTGCTG 400 289 634 Antisense
GCTGCTGCTGATGCTAGACAAGCTG 541 297 652 Antisense
CAAGCTGCTATTGTCGCGGAAAAGA 186 185 670 Antisense
CGCGGAAAAGACATCTGGACCCTCT 458 203 684 Antisense
GGACCCTCTCTTCTAGAAATTCATC 371 521 700 Antisense
AAGACGCGGGCTATGCACAAGGAGA 70 153 749 Antisense
CAAGGAGAACGCCGTCCGTTTGATC 350 183 766 Antisense
Sequence Source Affymetrix Proprietary Database