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[186948_at]

Description Y116A8C.11 /REP_DB=WormBase Gene ID /WP=CE23322 /TR=Q9U2T3 /GB=CAB55144.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 1.1
(-3)
A 		1.8
(-2.9)
A 		1.5
(-2.9)
A 		37.4
(3)
P 		36
B 16.9
(0.1)
A 		31.9
(3)
A 		0.9
(-3)
A 		29.3
(2.5)
A 		31
C 20.5
(-1.8)
A 		2.7
(-2.9)
A 		1.3
(-3)
A 		98.5
(3)
P 		97
avr 12.8
(-1.7) 		12.1
(-1.8) 		1.2
(-3) 		55.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 4.1
(-2.3)
A 		1.1
(-2.9)
A 		29.5
(3)
M 		0.7
(-3)
A 		25.5
(2.2)
A 		1.2
(-2.9)
A 		29
B 17.7
(0.8)
A 		27.8
(3)
A 		1.6
(-2.7)
A 		1.8
(-2.7)
A 		13.1
(-0.2)
A 		0.3
(-3)
A 		28
C 14.5
(-0.2)
A 		30.5
(2.9)
A 		1.4
(-2.8)
A 		30.8
(3)
A 		2.7
(-2.6)
A 		0.5
(-3)
A 		30
avr 12.1
(0.6) 		19.8
(3) 		10.8
(0.2) 		11.1
(0.3) 		13.8
(1.1) 		0.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		5.5
(3)
P 		5
B 5.4
(1.1)
A 		7.9
(3)
A 		0.2
(-3)
A 		6.2
(1.7)
A 		8
C 6.8
(-0.6)
A 		0.8
(-2.9)
A 		0.4
(-3)
A 		16.6
(3)
P 		16
avr 4.2
(-0.4) 		3
(-1.2) 		0.3
(-3) 		9.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.5)
A 		0.4
(-2.8)
A 		6.4
(2)
M 		0.2
(-3)
A 		7.7
(3)
A 		0.3
(-2.9)
A 		8
B 6.2
(1)
A 		9.3
(3)
A 		0.4
(-2.8)
A 		0.5
(-2.7)
A 		5.3
(0.4)
A 		0.1
(-3)
A 		9
C 5.4
(0.4)
A 		9.3
(3)
A 		0.3
(-2.9)
A 		6.2
(1)
A 		0.9
(-2.5)
A 		0.2
(-3)
A 		9
avr 4.1
(0.8) 		6.3
(3) 		2.4
(-0.8) 		2.3
(-0.9) 		4.6
(1.3) 		0.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8829
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.11 NCBI
Target Description Y116A8C.11 /REP_DB=WormBase Gene ID /WP=CE23322 /TR=Q9U2T3 /GB=CAB55144.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070613 NCBI Caenorhabditis elegans Y116A8C.11 (Y116A8C.11) mRNA, complete cds. 11/11 None
GENEFINDER00000004200 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16988785:16989728:1 11/11 None
Y116A8C.11 ENSEMBL cdna:known chromosome:CEL140:IV:16988785:16989728:1 gene:Y116A8C.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004083 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16988790-16989734(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.11
Entrez Gene 190998 Entrez gene
SwissProt Q9U2T3 EMBL-EBI
WormBase CE23322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55144 Hypothetical protein Y116A8C.11 [Caenorhabditis elegans] ref|NP_503014.1| Y116A8C.11 [Caenorhabditis elegans] sp|Q9U2T3|Y8CB_CAEEL Hypothetical protein Y116A8C.11 1.0E-154
blast CAB55124 Hypothetical protein Y116A8C.18 [Caenorhabditis elegans] ref|NP_503018.1| Y116A8C.18 [Caenorhabditis elegans] 2.0E-64
blast AAX52688 CG15792-PC, isoform C [Drosophila melanogaster] ref|NP_001014553.1| CG15792-PC, isoform C [Drosophila melanogaster] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:186948_AT
gaattgacactctcagaagatctaattgagtcactgaaaaaacaatttcaagcatcaaaa
atagagctaaaagaagagatattgtcaaaaaacaaggtagagaaagactattcgaacgac
aaacgttactttctcgaaagagaacaatatttattgataactatggagtctatggaatcg
ggcaagttggaacacgagcaacagaccgaaattatgaacaaagatgtagaagaattgaaa
attcgtgtcaaagaattggaggccactgatttatcagaaaagaatattgaattggaaaga
caagtgggaaagttgacagctcaacttcaagatttcgaaagttctcgaggttatgaacag
gaattaattctcagtcagctcgaagttcaaaaaaggaaattggacaaacaattgatagac
cttcaatcaaagttagaacgaaatccggagcttgtagagttcgataagctacacgaagag
ttgcaaacagaaagaatgaacatgcctgttcaagtttgttacgttcatgtttctttcatt
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGACACTCTCAGAAGATCTAA 544 323 268 Antisense
GAAAGACTATTCGAACGACAAACGT 690 357 369 Antisense
GACAAACGTTACTTTCTCGAAAGAG 709 363 385 Antisense
ACTATGGAGTCTATGGAATCGGGCA 14 101 427 Antisense
GAATCGGGCAAGTTGGAACACGAGC 438 327 442 Antisense
GGAACACGAGCAACAGACCGAAATT 237 529 456 Antisense
AATTCTCAGTCAGCTCGAAGTTCAA 109 175 633 Antisense
GAAATCCGGAGCTTGTAGAGTTCGA 92 363 707 Antisense
AAGCTACACGAAGAGTTGCAAACAG 549 141 733 Antisense
ATGCCTGTTCAAGTTTGTTACGTTC 524 39 769 Antisense
GTTACGTTCATGTTTCTTTCATTCA 254 447 785 Antisense
Sequence Source Affymetrix Proprietary Database