[Home] | [Total List]

[186947_s_at]

Description R08D7.1 /REP_DB=WormBase Gene ID /WP=CE00289 /TR=SW:P30640 /GB=CAA78047.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 291.5
(3)
P 		128.7
(-3)
P 		193.9
(-0.6)
P 		224.7
(0.5)
P 		163
B 358.4
(3)
P 		179.4
(-3)
P 		241.9
(-0.9)
P 		217.6
(-1.7)
P 		179
C 256.3
(1.8)
P 		156.1
(-3)
P 		282.1
(3)
P 		171.1
(-2.3)
P 		126
avr 302.1
(3) 		154.7
(-3) 		239.3
(0.4) 		204.5
(-1) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 648
1 2 3 4 5 6 range
A 207.7
(-3)
P 		218.2
(-2.8)
P 		248.9
(-2.2)
P 		342.3
(-0.5)
P 		397.5
(0.5)
P 		534.5
(3)
P 		327
B 303.2
(-2.6)
P 		278.9
(-3)
P 		345.4
(-1.9)
P 		298
(-2.7)
P 		328.1
(-2.2)
P 		656.2
(3)
P 		377
C 191.6
(-3)
P 		271.6
(-2.3)
P 		246.9
(-2.5)
P 		337.3
(-1.7)
P 		258.4
(-2.4)
P 		840
(3)
P 		648
avr 234.2
(-3) 		256.2
(-2.7) 		280.4
(-2.4) 		325.9
(-1.8) 		328
(-1.7) 		676.9
(3) 		443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 106.1
(3)
P 		27.9
(-3)
P 		50.7
(-1.3)
P 		32.9
(-2.6)
P 		78
B 114.3
(3)
P 		44.3
(-3)
P 		56
(-2)
P 		46.4
(-2.8)
P 		70
C 84.8
(1.8)
P 		44.9
(-1.6)
P 		98.3
(3)
P 		28.8
(-3)
P 		70
avr 101.7
(3) 		39
(-2.7) 		68.3
(-0.1) 		36
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 38.3
(-3)
P 		77.6
(-0.4)
P 		54.2
(-2)
P 		86.8
(0.2)
P 		119.9
(2.3)
P 		130.1
(3)
P 		92
B 105.5
(-2)
P 		92.8
(-2.5)
P 		83.9
(-2.8)
P 		78.9
(-3)
P 		133.3
(-1)
P 		244.7
(3)
P 		166
C 71
(-2.8)
P 		82.9
(-2.4)
P 		62.8
(-3)
P 		67.8
(-2.9)
P 		83.6
(-2.4)
P 		281.2
(3)
P 		218
avr 71.6
(-2.8) 		84.4
(-2.3) 		67
(-3) 		77.8
(-2.6) 		112.3
(-1.2) 		218.7
(3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186947_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7139
Sequence Type Exemplar sequence
Representative Public ID R08D7.1 NCBI
Target Description R08D7.1 /REP_DB=WormBase Gene ID /WP=CE00289 /TR=SW:P30640 /GB=CAA78047.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066581 NCBI Caenorhabditis elegans R08D7.1 (R08D7.1) mRNA, complete cds. 11/11 None
SNAP00000003053 ENSEMBL cdna:SNAP chromosome:CEL140:III:8966035:8967620:-1 11/11 None
GENEFINDER00000003065 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8966035:8967620:-1 11/11 None
R08D7.1 ENSEMBL cdna:known chromosome:CEL140:III:8965949:8967632:-1 gene:R08D7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8966030-8967616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08D7.1
Entrez Gene 176266 Entrez gene
SwissProt P30640 EMBL-EBI
WormBase CE00289 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246287_AT expressed protein at
CANINE:1594053_AT similar to CG13625-PA cfa
CANINE_2:CFA.8779.1.A1_AT similar to CG13625-PA cfa
CANINE_2:CFAAFFX.20725.1.S1_S_AT similar to CG13625-PA cfa
DROSOPHILA_2:1630397_AT dm
DROSGENOME1:152112_AT dm
CHICKEN:GGAAFFX.22136.1.S1_S_AT similar to RIKEN cDNA D030060M11 gga
HG-U133B:224504_S_AT hypothetical protein MGC13125 hs
HG-U133_PLUS_2:224504_S_AT hypothetical protein MGC13125 hs
U133_X3P:G13623490_3P_S_AT hypothetical protein MGC13125 hs
HG-U95C:60157_AT hypothetical protein MGC13125 hs
HG-U95D:73700_AT Hypothetical protein MGC13125 hs
HU35KSUBA:AA348359_AT Hypothetical protein MGC13125 hs
MOE430A:1460355_AT RIKEN cDNA D030060M11 gene mm
MOUSE430A_2:1460355_AT RIKEN cDNA D030060M11 gene mm
MOUSE430_2:1460355_AT RIKEN cDNA D030060M11 gene mm
MG-U74BV2:163415_AT RIKEN cDNA D030060M11 gene mm
MG-U74CV2:170775_AT RIKEN cDNA D030060M11 gene mm
RG-U34A:RC_AA875004_AT similar to RIKEN cDNA D030060M11 (predicted) rn
RAE230A:1377480_AT similar to RIKEN cDNA D030060M11 (predicted) rn
RAT230_2:1377480_AT similar to RIKEN cDNA D030060M11 (predicted) rn
RAE230B:1381321_AT Similar to RIKEN cDNA D030060M11 (predicted) rn
RAT230_2:1381321_AT Similar to RIKEN cDNA D030060M11 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA78047 Hypothetical protein R08D7.1 [Caenorhabditis elegans] ref|NP_498982.1| R08D7.1 [Caenorhabditis elegans] sp|P30640|YNE1_CAEEL Hypothetical protein R08D7.1 in chromosome III 8.0E-95
blast CAE62692 Hypothetical protein CBG06840 [Caenorhabditis briggsae] 5.0E-84
blast AAF56315 CG13625-PA [Drosophila melanogaster] gb|AAK77291.1| GH07383p [Drosophila melanogaster] ref|NP_651272.1| CG13625-PA [Drosophila melanogaster] 1.0E-32
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 5.30000019073486
Sequence
Target Sequence 
>C. ELEGANS:186947_S_AT
gatccggattgcaatcagcacgagatttgaaagaagagagcgataaactgagagctaaaa
attcgaaaatgtttgaagaaatggacacttcggtgagcggtcgattcgctgatactgtat
acagacagaaacaaacgaagaaaaaaggcaaagattctgaagaagatcaggcgaaaaaag
aacgcgaaacgaagaaaacagaagaattgaaagaaaaatataaatcatggaataaaggag
ttgctcagattgaagatcgtagagcacaacttgaagaaatggccagagttgctgctgagc
caatggctagagctcgagatgacgatgcaatgaatgcccatctaaaagaagtgctgcatg
cggctgatccgatggcaaacatgattcagaaaaagcgccgagacacagcaattgatcgtg
gagaactggtatatccttcatatcacggacattttgtaccaaatcgatttggaatcgccc
ccggatatcgatgggacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCGGATTGCAATCAGCACGAGA 691 415 788 Antisense
GGACACTTCGGTGAGCGGTCGATTC 626 525 870 Antisense
CGGTCGATTCGCTGATACTGTATAC 670 243 885 Antisense
GCCAGAGTTGCTGCTGAGCCAATGG 245 281 1069 Antisense
GCCAATGGCTAGAGCTCGAGATGAC 94 279 1086 Antisense
AAGAAGTGCTGCATGCGGCTGATCC 560 151 1133 Antisense
GCGGCTGATCCGATGGCAAACATGA 111 295 1147 Antisense
AAGCGCCGAGACACAGCAATTGATC 524 149 1180 Antisense
GGTATATCCTTCATATCACGGACAT 120 505 1215 Antisense
CAAATCGATTTGGAATCGCCCCCGG 353 191 1247 Antisense
TCGCCCCCGGATATCGATGGGACGG 576 593 1262 Antisense
Sequence Source Affymetrix Proprietary Database