[Home] | [Total List]

[186946_at]

Description Y18D10A.13 /REP_DB=WormBase Gene ID /WP=CE27468 /TR=Q9XW10 /GB=CAA22324.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 31      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 107.3
(1.8)
P 		49.7
(-3)
A 		60
(-2.1)
A 		121.1
(3)
A 		71
B 123.5
(3)
A 		93.5
(-3)
A 		98.5
(-2)
A 		99.7
(-1.8)
A 		30
C 134.4
(3)
A 		70.2
(-1.7)
A 		52.2
(-3)
A 		61.1
(-2.4)
A 		82
avr 121.7
(3) 		71.1
(-2.9) 		70.2
(-3) 		94
(-0.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 81.1
(-0.9)
A 		141
(3)
A 		48.8
(-3)
A 		93.8
(-0.1)
A 		67.3
(-1.8)
A 		116.6
(1.4)
A 		92
B 106.8
(3)
A 		92.6
(2)
P 		19.4
(-3)
A 		33.1
(-2.1)
A 		65.4
(0.2)
A 		61.9
(-0.1)
A 		87
C 172.3
(3)
A 		89.9
(-0.1)
A 		99.3
(0.3)
A 		11.2
(-3)
A 		86.5
(-0.2)
A 		29.1
(-2.3)
A 		161
avr 120.1
(3) 		107.8
(2) 		55.8
(-2.2) 		46
(-3) 		73.1
(-0.8) 		69.2
(-1.1) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 39.1
(3)
P 		10.8
(-3)
A 		15.7
(-2)
A 		17.7
(-1.5)
A 		28
B 39.4
(3)
A 		23.1
(-2.4)
A 		22.8
(-2.5)
A 		21.2
(-3)
A 		18
C 44.5
(3)
A 		20.2
(-1.3)
A 		18.2
(-1.6)
A 		10.3
(-3)
A 		34
avr 41
(3) 		18
(-2.6) 		18.9
(-2.4) 		16.4
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 14.9
(-2.3)
A 		50.1
(3)
A 		10.6
(-3)
A 		23.8
(-1)
A 		20.3
(-1.5)
A 		28.4
(-0.3)
A 		40
B 37.2
(3)
A 		30.8
(1.8)
P 		4.7
(-3)
A 		8.8
(-2.2)
A 		26.6
(1)
A 		23.1
(0.4)
A 		33
C 63.9
(3)
A 		27.4
(-0.6)
A 		25.3
(-0.8)
A 		2.3
(-3)
A 		28
(-0.5)
A 		9.7
(-2.3)
A 		62
avr 38.7
(3) 		36.1
(2.4) 		13.5
(-2.6) 		11.6
(-3) 		25
(-0) 		20.4
(-1.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1899
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.13 NCBI
Target Description Y18D10A.13 /REP_DB=WormBase Gene ID /WP=CE27468 /TR=Q9XW10 /GB=CAA22324.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060851 NCBI Caenorhabditis elegans PAtterning Defective family member (pad-1) (pad-1) mRNA, complete cds. 11/11 A 
SNAP00000000423 ENSEMBL cdna:SNAP chromosome:CEL140:I:12895345:12910463:1 11/11 None
Y18D10A.13 ENSEMBL cdna:known chromosome:CEL140:I:12886716:12910902:1 gene:Y18D10A.13 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000443 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12886703-12901972(+) 99.63 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pad-1
Ensembl Y18D10A.13
Entrez Gene 173156 Entrez gene
SwissProt Q9XW10 EMBL-EBI
WormBase CE27468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22324 Hypothetical protein Y18D10A.13 [Caenorhabditis elegans] ref|NP_493252.3| PAtterning Defective family member (pad-1) [Caenorhabditis elegans] 0.0
blast CAB59919 hypothetical protein [Caenorhabditis elegans] 0.0
blast CAE63510 Hypothetical protein CBG07989 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007249 EMBL-EBI Dopey, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186946_AT
tgacgtcatcatcgggtggtgtgcaacaggtaatccacgagaacgctactccaacaccat
catcaacatcaatggttggtcatgcaatgtcagttattcccggatcaaaagtagcgacag
aactattctcccaattgggaaaagtattctcaatgagtggagactctggcggtgtcatat
caaaactcgacagttcccgacaacatggaaatggatggcgtcaagcacaatcagacatgc
tctcatcacttccacactctcttgccactatttgtaatgtatggactgttgtccgcaggg
ctcagccaccgattgtaccaattggaacgaatagtcagttgagacggcttgtgctccatc
tcctatcacctattgctcaatatcataagcacgcattcctaacgtctcttgcgttggttt
ggctcacgcggagcactgcgaaaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTCATCATCGGGTGGTGTGCA 371 571 4844 Antisense
GGTAATCCACGAGAACGCTACTCCA 568 503 4872 Antisense
TGCAATGTCAGTTATTCCCGGATCA 229 577 4926 Antisense
GAGTGGAGACTCTGGCGGTGTCATA 480 401 4998 Antisense
ACTCGACAGTTCCCGACAACATGGA 482 99 5028 Antisense
CAATCAGACATGCTCTCATCACTTC 491 181 5071 Antisense
CACTCTCTTGCCACTATTTGTAATG 666 197 5098 Antisense
GTATGGACTGTTGTCCGCAGGGCTC 72 457 5122 Antisense
TAAGCACGCATTCCTAACGTCTCTT 660 637 5229 Antisense
TCTTGCGTTGGTTTGGCTCACGCGG 202 617 5250 Antisense
CTCACGCGGAGCACTGCGAAACCTA 352 229 5266 Antisense
Sequence Source Affymetrix Proprietary Database