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[186945_s_at]

Description Y116A8C.22 /REP_DB=WormBase Gene ID /WP=CE23331 /TR=Q9U2U9 /GB=CAB55128.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 42      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 29.6
(-2.1)
A 		85.9
(3)
A 		25.8
(-2.4)
A 		19.3
(-3)
A 		67
B 8.1
(-2.1)
A 		7.4
(-3)
A 		12.3
(3)
A 		11.8
(2.4)
A 		5
C 6.5
(-3)
A 		7.5
(-2.7)
A 		27.3
(3)
A 		21.2
(1.2)
A 		21
avr 14.7
(-3) 		33.6
(3) 		21.8
(-0.7) 		17.4
(-2.1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 52.6
(2.8)
A 		17.4
(-2.7)
A 		15.2
(-3)
A 		29.7
(-0.8)
A 		45.7
(1.7)
A 		53.9
(3)
A 		39
B 15.3
(-3)
A 		20
(-2.3)
A 		31.9
(-0.4)
A 		15.4
(-3)
A 		40.8
(1.1)
A 		52.9
(3)
A 		38
C 4.5
(-3)
A 		13.9
(-1.8)
A 		32.9
(0.8)
A 		29
(0.2)
A 		45.4
(2.4)
A 		49.8
(3)
A 		45
avr 24.1
(-1.8) 		17.1
(-3) 		26.7
(-1.4) 		24.7
(-1.7) 		44
(1.6) 		52.2
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.8
(0)
A 		18.6
(3)
A 		6.7
(-1.5)
A 		2.8
(-3)
A 		16
B 2.6
(1.4)
A 		1.8
(-3)
A 		2.9
(3)
A 		2.5
(0.8)
A 		1
C 2.2
(-3)
A 		2.2
(-3)
A 		9.5
(3)
A 		3.6
(-1.8)
A 		7
avr 5.2
(-0.1) 		7.5
(3) 		6.4
(1.5) 		3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.7
(0.7)
A 		6.2
(-1.3)
A 		3.3
(-3)
A 		7.5
(-0.6)
A 		13.8
(3)
A 		13.1
(2.6)
A 		11
B 5.3
(-2.5)
A 		6.6
(-2)
A 		7.7
(-1.6)
A 		4.1
(-3)
A 		16.6
(1.8)
A 		19.7
(3)
A 		16
C 1.7
(-3)
A 		4.2
(-2)
A 		8.4
(-0.3)
A 		5.8
(-1.4)
A 		14.7
(2.2)
A 		16.7
(3)
A 		15
avr 5.6
(-3) 		5.7
(-2.9) 		6.5
(-2.5) 		5.8
(-2.9) 		15
(2.2) 		16.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186945_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8767
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.22 NCBI
Target Description Y116A8C.22 /REP_DB=WormBase Gene ID /WP=CE23331 /TR=Q9U2U9 /GB=CAB55128.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070621 NCBI Caenorhabditis elegans Y116A8C.22 (Y116A8C.22) mRNA, complete cds. 11/11 None
GENEFINDER00000004178 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17046440:17048310:-1 11/11 None
Y116A8C.22 ENSEMBL cdna:known chromosome:CEL140:IV:17046427:17048316:-1 gene:Y116A8C.22 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004092 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17046445-17048316(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.22
Entrez Gene 178479 Entrez gene
SwissProt Q9U2U9 EMBL-EBI
WormBase CE23331 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55128 Hypothetical protein Y116A8C.22 [Caenorhabditis elegans] ref|NP_503022.1| Y116A8C.22 [Caenorhabditis elegans] 1.0E-153
Sequence
Target Sequence 
>C. ELEGANS:186945_S_AT
gcgtggaagaccagctggagcagcgaaatggagccaggaggtagctgtagtgctccaaaa
gcagccacagaggaaaagaggacggcctctgaaaattgcgaaaaagattgagccggtgtt
tcatcagaaaaaggaaagtaaacagaactcggaggaaaaggctctgattcaacaggaagc
tgtgaaaggtgagccaaagaatcgtggaagaccatgtggagcagcagaaaggagccggga
ggtagtcaagaagctccagaagcagccaccaaggaaaagaggaaggcctctgaaaatcgc
aaagaatatggagccggagattaatcagaaaaaggatactaaacaggtccatgtctgccc
aatctgcactctggcaagcaagaacggcacctgtctgtgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTGGAAGACCAGCTGGAGCAGCG 171 293 381 Antisense
GGAGCCAGGAGGTAGCTGTAGTGCT 604 521 410 Antisense
GTAGTGCTCCAAAAGCAGCCACAGA 98 457 427 Antisense
GAGGACGGCCTCTGAAAATTGCGAA 385 403 458 Antisense
GATTGAGCCGGTGTTTCATCAGAAA 247 435 486 Antisense
GGAGCAGCAGAAAGGAGCCGGGAGG 622 519 598 Antisense
GCTCCAGAAGCAGCCACCAAGGAAA 511 297 633 Antisense
GAGGAAGGCCTCTGAAAATCGCAAA 392 405 659 Antisense
CTAAACAGGTCCATGTCTGCCCAAT 176 225 719 Antisense
TGCCCAATCTGCACTCTGGCAAGCA 337 585 736 Antisense
GCAAGAACGGCACCTGTCTGTGCAC 530 319 758 Antisense
Sequence Source Affymetrix Proprietary Database