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[186944_at]

Description C23G10.10 /REP_DB=WormBase Gene ID /WP=CE04056 /TR=Q9GYR4 /GB=AAF99876.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 32.2
(-3)
A 		51.1
(3)
A 		41.5
(-0)
A 		49.3
(2.4)
A 		19
B 55.8
(1.5)
A 		43.6
(-0.7)
A 		30.7
(-3)
A 		64.1
(3)
A 		33
C 46.2
(-0.5)
A 		29.9
(-2.7)
A 		28.1
(-3)
A 		71.2
(3)
A 		43
avr 44.7
(-0.6) 		41.5
(-1.3) 		33.4
(-3) 		61.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 78.1
(3)
A 		56.7
(-0.1)
A 		65.2
(1.1)
A 		37
(-3)
A 		47.3
(-1.5)
P 		38.6
(-2.8)
A 		41
B 58.9
(0.4)
A 		55.3
(0)
A 		87.4
(3)
P 		53.8
(-0.1)
A 		31.3
(-2.2)
A 		22.5
(-3)
A 		65
C 60.4
(3)
A 		39.6
(0.4)
A 		38.2
(0.3)
A 		29.8
(-0.8)
A 		25.6
(-1.3)
A 		11.5
(-3)
A 		49
avr 65.8
(3) 		50.5
(0.8) 		63.6
(2.7) 		40.2
(-0.7) 		34.7
(-1.5) 		24.2
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.7
(3)
A 		11.1
(2.2)
A 		10.9
(1.9)
A 		7.2
(-3)
A 		5
B 17.8
(3)
A 		10.8
(-0.9)
A 		7.1
(-3)
A 		13.7
(0.7)
A 		11
C 15.3
(3)
A 		8.6
(-3)
A 		9.8
(-1.9)
A 		12
(0)
A 		7
avr 14.9
(3) 		10.2
(-2) 		9.3
(-3) 		11
(-1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 14.4
(-0.2)
A 		20.2
(3)
A 		14.2
(-0.3)
A 		9.4
(-3)
A 		14.3
(-0.3)
P 		9.4
(-3)
A 		11
B 20.5
(2.7)
A 		18.4
(1.7)
A 		21.2
(3)
P 		14.2
(-0.3)
A 		12.7
(-1)
A 		8.4
(-3)
A 		13
C 22.4
(3)
A 		12.1
(-0.3)
A 		9.7
(-1.1)
A 		6
(-2.3)
A 		8.3
(-1.5)
A 		3.8
(-3)
A 		19
avr 19.1
(3) 		16.9
(1.9) 		15
(0.9) 		9.9
(-1.6) 		11.8
(-0.7) 		7.2
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7107
Sequence Type Exemplar sequence
Representative Public ID C23G10.10 NCBI
Target Description C23G10.10 /REP_DB=WormBase Gene ID /WP=CE04056 /TR=Q9GYR4 /GB=AAF99876.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065952 NCBI Caenorhabditis elegans C23G10.10 (C23G10.10) mRNA, complete cds. 11/11 None
SNAP00000025624 ENSEMBL cdna:SNAP chromosome:CEL140:III:6213051:6213862:-1 11/11 None
GENEFINDER00000025633 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6213051:6213862:-1 11/11 None
C23G10.10 ENSEMBL cdna:known chromosome:CEL140:III:6213051:6213862:-1 gene:C23G10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6213049-6213861(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23G10.10
Entrez Gene 182815 Entrez gene
SwissProt Q9GYR4 EMBL-EBI
WormBase CE04056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99876 Hypothetical protein C23G10.10 [Caenorhabditis elegans] ref|NP_498353.1| C23G10.10 [Caenorhabditis elegans] 6.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498353.1 2 7-24,39-57
C23G10.10 2 7-24,39-57
SNAP00000025624 2 7-24,39-57
GENEFINDER00000025633 2 7-24,39-57
Sequence
Target Sequence 
>C. ELEGANS:186944_AT
acttcacttctgtaactcttctaattattatgttatcaaatgcattctctttctttcatg
gtcttgatggaaataaacataattgggaggttgtgcaaaagtgtttgacgaccgtaatca
tcaccaacctatttaatgtggtcatctgtttttactactctctcaagcttaatgacaaga
atccggacagcgaagcttacgttcgggataaactgattcattggcatgaagcattcataa
cattcgccatgtttagtattgctcaagctgaggcaagatactttgatgcagttcaggtgc
ttgagaagaccaacgcagaatatggttctcgttatccgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCACTTCTGTAACTCTTCTAAT 560 103 20 Antisense
GTTATCAAATGCATTCTCTTTCTTT 442 447 51 Antisense
ATTCTCTTTCTTTCATGGTCTTGAT 369 11 63 Antisense
TTGACGACCGTAATCATCACCAACC 450 701 124 Antisense
GTGGTCATCTGTTTTTACTACTCTC 171 489 157 Antisense
TACTACTCTCTCAAGCTTAATGACA 108 647 172 Antisense
GAATCCGGACAGCGAAGCTTACGTT 92 329 198 Antisense
GAAGCATTCATAACATTCGCCATGT 570 341 247 Antisense
ATTCGCCATGTTTAGTATTGCTCAA 496 9 261 Antisense
CAGGTGCTTGAGAAGACCAACGCAG 323 207 313 Antisense
GAATATGGTTCTCGTTATCCGAAGA 642 325 337 Antisense
Sequence Source Affymetrix Proprietary Database