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[186943_at]

Description Y113G7B.24 /REP_DB=WormBase Gene ID /WP=CE23303 /TR=Q9U2W9 /GB=CAB54336.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 89      4grp_high_8_8 > 07      6grp_total > 98      4grp_total > 07      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 99.8
(0.2)
P 		90
(-3)
P 		104.7
(1.8)
P 		108.2
(3)
A 		18
B 117.3
(3)
P 		67.3
(-3)
P 		114
(2.6)
P 		88.6
(-0.4)
A 		50
C 120.3
(0.2)
P 		72.9
(-3)
P 		97.1
(-1.4)
P 		162.5
(3)
P 		90
avr 112.5
(2) 		76.7
(-3) 		105.3
(1) 		119.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 62.8
(-3)
A 		81
(-1.2)
P 		74
(-1.9)
A 		89.5
(-0.3)
A 		104.8
(1.2)
P 		122.9
(3)
P 		60
B 71.8
(-1.4)
P 		56.9
(-3)
P 		70.4
(-1.6)
P 		61.9
(-2.5)
A 		83.7
(-0.1)
P 		112.8
(3)
P 		56
C 105.5
(1.7)
P 		47.3
(-3)
M 		89.7
(0.4)
P 		72.2
(-1)
P 		121.7
(3)
P 		117.4
(2.7)
P 		74
avr 80
(-1) 		61.7
(-3) 		78
(-1.3) 		74.5
(-1.6) 		103.4
(1.5) 		117.7
(3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 36.4
(3)
P 		19.5
(-1.9)
P 		27.4
(0.4)
P 		15.8
(-3)
A 		21
B 37.4
(3)
P 		16.6
(-3)
P 		26.4
(-0.2)
P 		18.9
(-2.3)
A 		21
C 39.8
(3)
P 		21
(-3)
P 		33.8
(1.1)
P 		27.4
(-1)
P 		19
avr 37.9
(3) 		19
(-3) 		29.2
(0.2) 		20.7
(-2.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.6
(-3)
A 		28.8
(2.2)
P 		16.1
(-1.7)
A 		22.7
(0.3)
A 		31.6
(3)
P 		29.9
(2.5)
P 		20
B 25
(-1)
P 		18.9
(-2.4)
P 		17.1
(-2.8)
P 		16.4
(-3)
A 		34
(1.1)
P 		42.1
(3)
P 		26
C 39.1
(2.9)
P 		14.4
(-3)
M 		22.8
(-1)
P 		14.5
(-3)
P 		39.4
(3)
P 		39.3
(3)
P 		25
avr 25.2
(-0.7) 		20.7
(-2.1) 		18.7
(-2.8) 		17.9
(-3) 		35
(2.3) 		37.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13352
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.24 NCBI
Target Description Y113G7B.24 /REP_DB=WormBase Gene ID /WP=CE23303 /TR=Q9U2W9 /GB=CAB54336.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075504 NCBI Caenorhabditis elegans Y113G7B.24 (Y113G7B.24) mRNA, complete cds. 11/11 None
GENEFINDER00000024723 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20233271:20235723:-1 11/11 None
Y113G7B.24 ENSEMBL cdna:known chromosome:CEL140:V:20233271:20235723:-1 gene:Y113G7B.24 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024716 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20233270-20235723(-) 88.5 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.24
Entrez Gene 190979 Entrez gene
SwissProt Q9U2W9 EMBL-EBI
WormBase CE23303 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54336 Hypothetical protein Y113G7B.24 [Caenorhabditis elegans] ref|NP_507905.1| Y113G7B.24 [Caenorhabditis elegans] 1.0E-133
blast CAB54336 Hypothetical protein Y113G7B.24 [Caenorhabditis elegans] ref|NP_507905.1| Y113G7B.24 [Caenorhabditis elegans] 1.0E-128
blast CAE67425 Hypothetical protein CBG12913 [Caenorhabditis briggsae] 9.0E-47
blast CAE67425 Hypothetical protein CBG12913 [Caenorhabditis briggsae] 1.0E-46
blast AAF56561 CG14549-PA [Drosophila melanogaster] ref|NP_651457.1| CG14549-PA [Drosophila melanogaster] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR008591 EMBL-EBI Eukaryotic protein of unknown function DUF873 1.0E-126
Pfam IPR008591 EMBL-EBI Eukaryotic protein of unknown function DUF873 6.6E-81
Pfam IPR008591 EMBL-EBI Eukaryotic protein of unknown function DUF873 6.4E-80
Sequence
Target Sequence 
>C. ELEGANS:186943_AT
gaatctcagttcatcgagtcgagcttcaacgcattggatgccgcctccaaaaaatcgaat
caaatccacacgacgcaatcgatcaacacaaaaaacgaaaagaagagggaaaaagtgatc
tactatcggaatctgagatgaaattcgccgaagaatatgctctagcggagtcgaaccttt
ttcagaaaactgtcctgggtacggcggatggatttttggttgaaaatttttttttttctc
tcaaaaactgcaaaatttcgcttaatgccacgtggcaatttttacaatttttttttcaaa
atttcaaaaaaaaaaaatttcaaaattcccaaaaaaaaactttttttttcaaaatttcaa
aaaaaaaaaaatttcccaaaaactctcaattttcttcagaattcatgccagcagcgctta
aaaagatgccagttccacgtggcgatcatgatgacgtcatggtttacgcaaaagtgacgt
cagatgacgtgggcaacgttgcgattccggattggcaggatttgaatggagaagtgattt
tggaaatggaaccggaatcgtgtcatttgattccgttcgaatcggtacatcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTCAGTTCATCGAGTCGAGCT 82 329 239 Antisense
GCATTGGATGCCGCCTCCAAAAAAT 316 307 269 Antisense
GAATCAAATCCACACGACGCAATCG 496 327 295 Antisense
GCTCTAGCGGAGTCGAACCTTTTTC 119 295 397 Antisense
GAAAACTGTCCTGGGTACGGCGGAT 172 353 423 Antisense
AAAATTTCGCTTAATGCCACGTGGC 352 133 490 Antisense
TCTTCAGAATTCATGCCAGCAGCGC 538 615 631 Antisense
AGATGCCAGTTCCACGTGGCGATCA 431 67 662 Antisense
GCAACGTTGCGATTCCGGATTGGCA 502 319 731 Antisense
AATCGTGTCATTTGATTCCGTTCGA 480 167 794 Antisense
ATTCCGTTCGAATCGGTACATCAAT 687 3 808 Antisense
Sequence Source Affymetrix Proprietary Database