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[186942_s_at]

Description C41C4.7 /REP_DB=WormBase Gene ID /WP=CE01522 /TR=SW:Q09500 /GB=CAA88102.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 99      6grp_total > 97      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2734
1 2 3 4 range
A 460.3
(-3)
P 		458.4
(-3)
P 		478.2
(-2.9)
P 		1768.4
(3)
P 		1310
B 390.6
(-3)
P 		397.5
(-3)
P 		489.7
(-2.8)
P 		3116.7
(3)
P 		2726
C 462.1
(-2.8)
P 		383
(-3)
P 		484.6
(-2.7)
P 		2779.9
(3)
P 		2397
avr 437.7
(-2.9) 		413
(-3) 		484.2
(-2.8) 		2555
(3) 		2142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2138
1 2 3 4 5 6 range
A 724.2
(-2.5)
P 		629.4
(-3)
P 		862.4
(-1.8)
P 		1134.6
(-0.4)
P 		1233.4
(0.1)
P 		1807.3
(3)
P 		1178
B 690.1
(-2)
P 		582.1
(-2.4)
P 		385.9
(-3)
P 		1099.1
(-0.8)
P 		1631
(0.9)
P 		2295.5
(3)
P 		1910
C 520.8
(-3)
P 		516.8
(-3)
P 		789
(-2.2)
P 		689.8
(-2.5)
P 		1511.4
(-0)
P 		2524.1
(3)
P 		2007
avr 645
(-2.7) 		576.1
(-3) 		679.1
(-2.6) 		974.5
(-1.5) 		1458.6
(0.2) 		2209
(3) 		1633
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 566
1 2 3 4 range
A 167.6
(-0.4)
P 		99.5
(-3)
P 		125
(-2)
P 		258.9
(3)
P 		159
B 124.6
(-2.7)
P 		98.2
(-3)
P 		113.5
(-2.8)
P 		664.2
(3)
P 		566
C 153
(-2.3)
P 		110.1
(-3)
P 		168.9
(-2)
P 		468.7
(3)
P 		359
avr 148.4
(-2.2) 		102.6
(-3) 		135.8
(-2.4) 		463.9
(3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 133.5
(-3)
P 		223.8
(-1.2)
P 		187.8
(-1.9)
P 		287.8
(0)
P 		372.2
(1.7)
P 		440
(3)
P 		307
B 240.1
(-1.8)
P 		193.8
(-2.2)
P 		93.7
(-3)
P 		291.1
(-1.4)
P 		662.7
(1.5)
P 		856
(3)
P 		762
C 193
(-2.5)
P 		157.7
(-2.8)
P 		200.8
(-2.5)
P 		138.7
(-3)
P 		489.1
(-0)
P 		845
(3)
P 		706
avr 188.9
(-2.7) 		191.8
(-2.7) 		160.8
(-3) 		239.2
(-2.1) 		508
(0.8) 		713.7
(3) 		553
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186942_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4034
Sequence Type Exemplar sequence
Representative Public ID C41C4.7 NCBI
Target Description C41C4.7 /REP_DB=WormBase Gene ID /WP=CE01522 /TR=SW:Q09500 /GB=CAA88102.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182222, NM_063303
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C41C4.7a ENSEMBL cdna:known chromosome:CEL140:II:8134396:8136828:-1 gene:C41C4.7 None
C41C4.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:8134701:8136839:-1 gene:C41C4.7 None
SNAP00000036864 ENSEMBL cdna:SNAP chromosome:CEL140:II:8134800:8136828:-1 None
C41C4.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:8134701:8136837:-1 gene:C41C4.7 None
NM_063303 NCBI Caenorhabditis elegans C41C4.7a (C41C4.7) mRNA, complete cds. None
GENEFINDER00000036872 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8134800:8136828:-1 None
NM_182222 NCBI Caenorhabditis elegans C41C4.7b (C41C4.7) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8134796-8136825(-) 91.94 100.0
Public Domain and Genome References
Ensembl C41C4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88102 Hypothetical protein C41C4.7a [Caenorhabditis elegans] ref|NP_495704.1| C41C4.7a [Caenorhabditis elegans] sp|Q09500|CTNS_CAEEL Cystinosin homolog 0.0
blast CAD56564 Hypothetical protein C41C4.7b [Caenorhabditis elegans] ref|NP_872022.1| C41C4.7b [Caenorhabditis elegans] 0.0
blast CAE57736 Hypothetical protein CBG00747 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006603 EMBL-EBI Cystinosin/ERS1p repeat 2.0E-28
Pfam IPR006603 EMBL-EBI Cystinosin/ERS1p repeat 4.5E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495704.1 7 5-25,122-144,164-183,203-225,240-259,296-318,338-360
NP_872022.1 7 5-25,122-144,164-183,203-225,240-259,298-320,340-359
C41C4.7a 7 5-25,122-144,164-183,203-225,240-259,296-318,338-360
C41C4.7b.2 7 5-25,122-144,164-183,203-225,240-259,298-320,340-359
C41C4.7b.1 7 5-25,122-144,164-183,203-225,240-259,298-320,340-359
SNAP00000036864 7 5-25,122-144,164-183,203-225,240-259,296-318,338-360
GENEFINDER00000036872 7 5-25,122-144,164-183,203-225,240-259,296-318,338-360
Sequence
Target Sequence 
>C. ELEGANS:186942_S_AT
aatatttcccacaggtttgtttcatattgtccatttgtaaacagtattctagcctgaaat
tattttttattatttttaaattactagtttttccaaaaaagttttcaaaacttgaccgcg
aaattttgcgccaaaactacggtatccggtctcgatacgacagattttgtttaactcaaa
aagttgtgcgccttaaaaagtactgtatcgtcatcaaaaattcacgaaaaaaagctggga
aaatgatgttttatcgaaaacatgcttacttcaactatacccgaaaaagtacagttggat
ggtcaatcggaaacatcatgctagatttcacaggaggaactctcgatattcttcaaatga
ttcttcaagcagttaatgtgaacgattggtctgcattttatgcgaatcccgtcaaattcg
gactgggatttgtctcaatattctttgacatcattttcatggttcaacattatgtattgt
atccaaatgcagaagttccacacaatgaatatcatggtgttgacaatcccaatccagaca
atattgctcgtgatgctgaacaatatgccggcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATTTCCCACAGGTTTGTTTCAT 544 173 857 Antisense
GTTTGTTTCATATTGTCCATTTGTA 570 451 871 Antisense
ATCCGGTCTCGATACGACAGATTTT 355 37 1000 Antisense
GGTCAATCGGAAACATCATGCTAGA 580 503 1157 Antisense
GGAGGAACTCTCGATATTCTTCAAA 543 515 1189 Antisense
GTGAACGATTGGTCTGCATTTTATG 103 483 1234 Antisense
TGCATTTTATGCGAATCCCGTCAAA 331 579 1248 Antisense
AATTCGGACTGGGATTTGTCTCAAT 254 177 1271 Antisense
TCATGGTGTTGACAATCCCAATCCA 252 611 1368 Antisense
GACAATATTGCTCGTGATGCTGAAC 10 365 1393 Antisense
GATGCTGAACAATATGCCGGCGACA 160 413 1408 Antisense
Sequence Source Affymetrix Proprietary Database