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[186940_at]

Description B0272.2 /REP_DB=WormBase Gene ID /WP=CE00851 /TR=SW:P41941 /GB=CAA86311.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 03      4grp_total > 60      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 144.8
(-0.1)
A 		186.3
(1.5)
A 		227
(3)
P 		69.3
(-3)
A 		158
B 233.4
(2.7)
A 		241.9
(3)
A 		195.6
(1.6)
A 		44.5
(-3)
A 		197
C 164.8
(3)
A 		138.8
(0.3)
A 		135.2
(-0.1)
M 		107.7
(-3)
A 		57
avr 181
(2.6) 		189
(3) 		185.9
(2.8) 		73.8
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 203.1
(3)
A 		121.5
(-1.7)
M 		146.9
(-0.3)
M 		148.6
(-0.2)
P 		166.9
(0.9)
P 		99.5
(-3)
M 		104
B 191.9
(0.8)
A 		228.3
(3)
P 		200.2
(1.3)
P 		163.2
(-1)
P 		177.2
(-0.1)
P 		130.1
(-3)
P 		98
C 163.1
(-0.9)
P 		231.4
(3)
P 		145.2
(-1.9)
A 		181.5
(0.2)
A 		127.8
(-2.9)
A 		125.6
(-3)
P 		106
avr 186
(2.4) 		193.7
(3) 		164.1
(0.6) 		164.4
(0.7) 		157.3
(0.1) 		118.4
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 52.7
(2.2)
A 		40.4
(0.7)
A 		59.3
(3)
P 		10.1
(-3)
A 		49
B 74.4
(3)
A 		59.7
(1.6)
A 		45.3
(0.3)
A 		9.5
(-3)
A 		65
C 54.6
(3)
A 		39.9
(0.6)
A 		47.1
(1.8)
M 		18.2
(-3)
A 		36
avr 60.6
(3) 		46.7
(1.3) 		50.6
(1.8) 		12.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 37.4
(0)
A 		43.2
(1.4)
M 		32
(-1.2)
M 		37.7
(0.1)
P 		50.4
(3)
P 		24.2
(-3)
M 		26
B 66.8
(1.3)
A 		76
(3)
P 		48.6
(-2)
P 		43.2
(-3)
P 		72
(2.3)
P 		48.5
(-2)
P 		33
C 60.5
(1.2)
P 		70.6
(3)
P 		37
(-2.9)
A 		36.5
(-3)
A 		41.4
(-2.1)
A 		42.1
(-2)
P 		34
avr 54.9
(1) 		63.3
(3) 		39.2
(-2.8) 		39.1
(-2.8) 		54.6
(0.9) 		38.3
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17144
Sequence Type Exemplar sequence
Representative Public ID B0272.2 NCBI
Target Description B0272.2 /REP_DB=WormBase Gene ID /WP=CE00851 /TR=SW:P41941 /GB=CAA86311.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077185 NCBI Caenorhabditis elegans B0272.2 (B0272.2) mRNA, complete cds. 11/11 None
B0272.2 ENSEMBL cdna:known chromosome:CEL140:X:9440328:9441494:-1 gene:B0272.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025032 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9440327-9441494(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0272.2
Entrez Gene 181891 Entrez gene
SwissProt P41941 EMBL-EBI
WormBase CE00851 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586511_AT similar to golgi SNAP receptor complex member 2 cfa
CANINE_2:CFA.6620.1.A1_AT similar to golgi SNAP receptor complex member 2 cfa
CANINE_2:CFAAFFX.20753.1.S1_S_AT similar to golgi SNAP receptor complex member 2 cfa
DROSOPHILA_2:1624027_AT dm
DROSGENOME1:148217_AT dm
HG-U133A:210009_S_AT golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:210009_S_AT golgi SNAP receptor complex member 2 hs
HG-U133A_2:210009_S_AT golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:235041_AT golgi SNAP receptor complex member 2 hs
HG-U133B:235041_AT golgi SNAP receptor complex member 2 hs
HU35KSUBA:AA084932_AT golgi SNAP receptor complex member 2 hs
HU35KSUBA:RC_AA237034_AT golgi SNAP receptor complex member 2 hs
HU35KSUBB:RC_W31482_AT golgi SNAP receptor complex member 2 hs
HU35KSUBB:RC_R42068_AT golgi SNAP receptor complex member 2 hs
HU35KSUBD:RC_AA235045_AT golgi SNAP receptor complex member 2 hs
HU35KSUBD:RC_W44434_AT golgi SNAP receptor complex member 2 hs
U133_X3P:G12711466_3P_A_AT golgi SNAP receptor complex member 2 hs
U133_X3P:HS.190151.0.A1_3P_AT golgi SNAP receptor complex member 2 hs
U133_X3P:HS.100651.1.S2_3P_A_AT golgi SNAP receptor complex member 2 hs
U133_X3P:HS.100651.1.S1_3P_AT golgi SNAP receptor complex member 2 hs
HG-U133A_2:213144_AT golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:213144_AT golgi SNAP receptor complex member 2 hs
HG-U133A:213144_AT golgi SNAP receptor complex member 2 hs
HG-U133A_2:213180_S_AT golgi SNAP receptor complex member 2 hs
HG-FOCUS:213180_S_AT golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:213180_S_AT golgi SNAP receptor complex member 2 hs
HG-U133A:213180_S_AT golgi SNAP receptor complex member 2 hs
HG-U133A_2:213206_AT golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:213206_AT golgi SNAP receptor complex member 2 hs
HG-U133A:213206_AT golgi SNAP receptor complex member 2 hs
HG-U133A_2:213207_S_AT golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:213207_S_AT golgi SNAP receptor complex member 2 hs
HG-U133A:213207_S_AT golgi SNAP receptor complex member 2 hs
HG-U95AV2:38619_AT golgi SNAP receptor complex member 2 hs
HG-U95AV2:38620_AT golgi SNAP receptor complex member 2 hs
HG-U95B:48387_AT golgi SNAP receptor complex member 2 hs
HU35KSUBC:RC_AA476609_AT Golgi SNAP receptor complex member 2 hs
HG-U95B:53614_AT Golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:229255_X_AT Golgi SNAP receptor complex member 2 hs
HG-U133B:229255_X_AT Golgi SNAP receptor complex member 2 hs
HG-U133_PLUS_2:239159_AT Golgi SNAP receptor complex member 2 hs
HG-U133B:239159_AT Golgi SNAP receptor complex member 2 hs
HG-U95D:91452_AT Golgi SNAP receptor complex member 2 hs
U133_X3P:HS.155616.0.A1_3P_AT Golgi SNAP receptor complex member 2 hs
MG-U74AV2:94071_AT golgi SNAP receptor complex member 2 mm
MOUSE430_2:1419371_S_AT golgi SNAP receptor complex member 2 mm
MOE430A:1419371_S_AT golgi SNAP receptor complex member 2 mm
MOUSE430A_2:1419371_S_AT golgi SNAP receptor complex member 2 mm
MU11KSUBB:W41834_AT golgi SNAP receptor complex member 2 mm
MG-U74AV2:99986_AT golgi SNAP receptor complex member 2 mm
MG-U74AV2:94072_G_AT golgi SNAP receptor complex member 2 mm
MG-U74AV2:94070_AT golgi SNAP receptor complex member 2 mm
MOE430A:1419372_AT golgi SNAP receptor complex member 2 mm
MOUSE430A_2:1419372_AT golgi SNAP receptor complex member 2 mm
MOUSE430_2:1419372_AT golgi SNAP receptor complex member 2 mm
MU19KSUBA:TC17632_AT Golgi SNAP receptor complex member 2, mRNA (cDNA clone MGC:6437 IMAGE:3601627) mm
MU19KSUBA:TC22599_AT Golgi SNAP receptor complex member 2, mRNA (cDNA clone MGC:6437 IMAGE:3601627) mm
RG-U34A:RC_AI175208_AT golgi SNAP receptor complex member 2 rn
RG-U34B:RC_AA964687_AT golgi SNAP receptor complex member 2 rn
RAE230A:1375438_AT golgi SNAP receptor complex member 2 rn
RAT230_2:1375438_AT golgi SNAP receptor complex member 2 rn
RAE230A:1374900_AT golgi SNAP receptor complex member 2 rn
RAT230_2:1374900_AT golgi SNAP receptor complex member 2 rn
RAE230A:1370031_AT golgi SNAP receptor complex member 2 rn
RAT230_2:1370031_AT golgi SNAP receptor complex member 2 rn
RG-U34A:RC_AA875664_AT Golgi SNAP receptor complex member 2 rn
RG-U34B:RC_AI043904_AT Golgi SNAP receptor complex member 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86311 Hypothetical protein B0272.2 [Caenorhabditis elegans] ref|NP_509586.1| B0272.2 [Caenorhabditis elegans] sp|P41941|GOSR2_CAEEL Probable 27 kDa Golgi SNARE protein (Golgi SNAP receptor complex member 2) 1.0E-120
blast CAE69819 Hypothetical protein CBG16136 [Caenorhabditis briggsae] 1.0E-102
blast CAE64600 Hypothetical protein CBG09355 [Caenorhabditis briggsae] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR007705 EMBL-EBI Vesicle transport v-SNARE 1.2E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509586.1 1 190-212
B0272.2 1 190-212
Sequence
Target Sequence 
>C. ELEGANS:186940_AT
ggttcaacatgaccttggacgactagaaggcactcaaaacgaacaagatgcgcaagttgt
tgtacagtgcatatatggtgatgtcataaccctgaaggaaaactgccagacattagataa
ttacgtttctcgagaacctccagcgaggcggcaagcggcccgaatgagagttgatcagtt
acgcgccgacgtccacagagttgatatggccgtttcggcagtacacacgagaatgacaca
aagatggagagctgctactgaacgagatgagcttcttaggacgcgatatcggccaaacga
tacagcgctttcaattggagaccacgagcttcttctcaatgatcgcctgcaatcttccca
cactcatcttgacgatctgataagtcaaggatctgctgtactcgaaaacttgaaatccca
gcatttaaatttacgcggcgttgggagaaaaatgcatgaaattggccaagctttgggtct
ctctaactcgacacttcaagtcatcgatcggcgtgttcgtgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCAACATGACCTTGGACGACTA 434 505 54 Antisense
CGCCGACGTCCACAGAGTTGATATG 29 257 237 Antisense
GCCGTTTCGGCAGTACACACGAGAA 285 283 262 Antisense
GCTTCTTAGGACGCGATATCGGCCA 93 305 324 Antisense
ATTGGAGACCACGAGCTTCTTCTCA 550 3 367 Antisense
TTCTTCTCAATGATCGCCTGCAATC 690 689 383 Antisense
CCCACACTCATCTTGACGATCTGAT 8 259 410 Antisense
GTCAAGGATCTGCTGTACTCGAAAA 512 463 437 Antisense
TTGGCCAAGCTTTGGGTCTCTCTAA 7 709 515 Antisense
GTCTCTCTAACTCGACACTTCAAGT 457 469 530 Antisense
GTCATCGATCGGCGTGTTCGTGAGG 64 467 553 Antisense
Sequence Source Affymetrix Proprietary Database