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[186939_at]

Description C04E12.11 /REP_DB=WormBase Gene ID /WP=CE16824 /TR=O76684 /GB=AAC27096.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 34      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 5.2
(-2.4)
A 		3.2
(-3)
A 		18.4
(1.8)
A 		22.2
(3)
A 		19
B 5.9
(-3)
A 		43.1
(3)
A 		9.1
(-2.5)
A 		16.7
(-1.3)
A 		37
C 3.6
(-3)
A 		8.2
(-0.1)
A 		7.1
(-0.8)
A 		13.1
(3)
A 		10
avr 4.9
(-3) 		18.2
(3) 		11.5
(-0) 		17.3
(2.6) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 19.5
(3)
A 		11.3
(0.3)
A 		1.1
(-3)
A 		3.4
(-2.3)
A 		19.1
(2.9)
A 		6.2
(-1.3)
A 		18
B 5.4
(-2)
A 		24.6
(3)
A 		1.6
(-3)
A 		7.9
(-1.4)
A 		5.5
(-2)
A 		13.6
(0.1)
A 		23
C 19.5
(2.5)
A 		20.9
(3)
A 		5.1
(-3)
A 		5.7
(-2.8)
A 		17.6
(1.7)
A 		13.6
(0.2)
A 		16
avr 14.8
(1.5) 		18.9
(3) 		2.6
(-3) 		5.7
(-1.9) 		14.1
(1.2) 		11.1
(0.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.9
(-1.2)
A 		0.7
(-3)
A 		4.8
(3)
A 		3.3
(0.8)
A 		4
B 1.9
(-3)
A 		10.6
(3)
A 		2.1
(-2.9)
A 		3.6
(-1.8)
A 		9
C 1.2
(-3)
A 		2.4
(2.5)
A 		2.5
(3)
A 		2.2
(1.6)
A 		1
avr 1.7
(-3) 		4.6
(3) 		3.1
(-0.1) 		3
(-0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.6
(0.6)
A 		4
(1.1)
A 		0.2
(-3)
A 		0.9
(-2.3)
A 		5.8
(3)
A 		1.5
(-1.6)
A 		6
B 1.9
(-1.8)
A 		8.2
(3)
A 		0.4
(-3)
A 		2.1
(-1.7)
A 		2.2
(-1.6)
A 		5.1
(0.6)
A 		8
C 7.2
(3)
A 		6.4
(2.2)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		5.7
(1.5)
A 		4.5
(0.3)
A 		6
avr 4.2
(0.9) 		6.2
(3) 		0.6
(-3) 		1.4
(-2.1) 		4.6
(1.3) 		3.7
(0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186939_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14966
Sequence Type Exemplar sequence
Representative Public ID C04E12.11 NCBI
Target Description C04E12.11 /REP_DB=WormBase Gene ID /WP=CE16824 /TR=O76684 /GB=AAC27096.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071515, NM_071542
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029756 ENSEMBL cdna:SNAP chromosome:CEL140:V:3385519:3387982:-1 11/11 None
GENEFINDER00000029764 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3385519:3387982:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3385518-3387982(-) 100.0 100.0
chrV:3310095-3311936(-) 90.24 90.24
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99936 Hypothetical protein F35F10.11 [Caenorhabditis elegans] ref|NP_503916.1| F35F10.11 [Caenorhabditis elegans] 0.0
blast AAB37591 Hypothetical protein T20D4.6 [Caenorhabditis elegans] ref|NP_503955.1| T20D4.6 [Caenorhabditis elegans] 0.0
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 8.3E-45
Pfam IPR000698 EMBL-EBI Arrestin 2.2E-51
Pfam IPR000698 EMBL-EBI Arrestin 8.3E-45
Pfam IPR000698 EMBL-EBI Arrestin 3.9E-53
Sequence
Target Sequence 
>C. ELEGANS:186939_AT
atcaatcagttttctcctgtggttactgtagagtacattttacaagtcaatgtagacggt
atagttcgttgcgaatcgtcaatcttacttggatcagttcccattcgccagtaccttcca
cctgcctactatcaacaggatccaaatctcccaccgagcaagccaactccgattggagca
ccaccaccaggttacggagccctaccgaccgacgattccgagaaaggcgccgatgcaccg
tatccacttgggttgtaccctaacgtcaatgatgagaaagttccaagctcaagcgaagat
catggagctgcagtgattccgagcgcaccaccatcctaccaagaatcaatgtatggaaaa
ggaggaaccgtgctcgacgccaaagaaaatggaccatttgttccgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATCAGTTTTCTCCTGTGGTTA 227 27 931 Antisense
TCAGTTTTCTCCTGTGGTTACTGTA 678 611 936 Antisense
GGTATAGTTCGTTGCGAATCGTCAA 653 501 988 Antisense
TTACTTGGATCAGTTCCCATTCGCC 421 683 1015 Antisense
TATCCACTTGGGTTGTACCCTAACG 391 649 1171 Antisense
TGGGTTGTACCCTAACGTCAATGAT 659 553 1179 Antisense
TGTACCCTAACGTCAATGATGAGAA 622 559 1184 Antisense
GAGAAAGTTCCAAGCTCAAGCGAAG 411 393 1204 Antisense
CTCAAGCGAAGATCATGGAGCTGCA 34 227 1218 Antisense
TGGAGCTGCAGTGATTCCGAGCGCA 685 547 1233 Antisense
GAAAATGGACCATTTGTTCCGAAAT 426 351 1315 Antisense
Sequence Source Affymetrix Proprietary Database