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[186938_at]

Description Y62E10A.16 /REP_DB=WormBase Gene ID /WP=CE24540 /TR=Q9U1W5 /GB=CAB60609.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 14      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 39.7
(1.6)
P 		13.3
(-1.8)
A 		4.3
(-3)
A 		50.8
(3)
A 		47
B 55
(0.4)
P 		23
(-2.4)
A 		15.4
(-3)
A 		86.1
(3)
P 		71
C 43.3
(3)
M 		5
(-3)
A 		14.1
(-1.6)
A 		16.6
(-1.2)
A 		38
avr 46
(2.2) 		13.8
(-2.6) 		11.3
(-3) 		51.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		13.9
(-0.1)
A 		26.5
(3)
A 		3.7
(-2.5)
A 		3.9
(-2.5)
A 		1.8
(-3)
A 		25
B 36.6
(3)
A 		16.7
(-0.4)
A 		11.3
(-1.3)
A 		30.2
(1.9)
A 		1
(-3)
A 		21.8
(0.5)
A 		36
C 1.3
(-3)
A 		2.5
(-2.7)
A 		15.8
(0.2)
A 		28.1
(3)
A 		2.9
(-2.6)
A 		14.7
(0)
A 		27
avr 13.7
(0.7) 		11
(-0.2) 		17.9
(2.1) 		20.7
(3) 		2.6
(-3) 		12.8
(0.4) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.4
(3)
P 		2.9
(-2.2)
A 		1.1
(-3)
A 		7.4
(-0.2)
A 		13
B 17.5
(2.7)
P 		5.7
(-2.1)
A 		3.6
(-3)
A 		18.3
(3)
P 		15
C 14.3
(3)
M 		1.4
(-3)
A 		4.9
(-1.4)
A 		2.8
(-2.3)
A 		13
avr 15.4
(3) 		3.3
(-3) 		3.2
(-3) 		9.5
(0.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		4.9
(2)
A 		5.8
(3)
A 		0.9
(-2.4)
A 		1.2
(-2.1)
A 		0.4
(-3)
A 		5
B 12.7
(3)
A 		5.5
(-0.5)
A 		2.7
(-1.9)
A 		8
(0.7)
A 		0.4
(-3)
A 		8.1
(0.8)
A 		12
C 0.5
(-3)
A 		0.8
(-2.7)
A 		4
(1)
A 		5.7
(3)
A 		0.9
(-2.5)
A 		4.9
(2.1)
A 		5
avr 4.6
(2.6) 		3.7
(1.2) 		4.2
(2) 		4.9
(3) 		0.8
(-3) 		4.5
(2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10175
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.16 NCBI
Target Description Y62E10A.16 /REP_DB=WormBase Gene ID /WP=CE24540 /TR=Q9U1W5 /GB=CAB60609.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070184 NCBI Caenorhabditis elegans GCL (Drosophila germ cell-less) homolog family member (gcl-1) (gcl-1) mRNA, complete cds. 11/11 None
SNAP00000008086 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13408982:13412858:-1 11/11 None
GENEFINDER00000008094 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13403849:13412858:-1 11/11 None
Y62E10A.16 ENSEMBL cdna:known chromosome:CEL140:IV:13408314:13412864:-1 gene:Y62E10A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13408987-13412864(-) 96.38 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gcl-1
Ensembl Y62E10A.16
Entrez Gene 190457 Entrez gene
SwissProt Q9U1W5 EMBL-EBI
WormBase CE24540 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.1020.1.A1_AT similar to germ cell-less protein cfa
CANINE_2:CFAAFFX.5892.1.S1_S_AT similar to germ cell-less protein cfa
DROSGENOME1:154187_AT germ cell-less dm
DROSOPHILA_2:1628210_AT germ cell-less dm
HG-U133_PLUS_2:234488_S_AT germ cell-less homolog 1 (Drosophila) hs
HG-U133B:234488_S_AT germ cell-less homolog 1 (Drosophila) hs
HG-U95B:43437_AT germ cell-less homolog 1 (Drosophila) hs
HU35KSUBB:RC_N49388_AT germ cell-less homolog 1 (Drosophila) hs
HG-U133A:218458_AT germ cell-less homolog 1 (Drosophila) hs
HG-U133_PLUS_2:218458_AT germ cell-less homolog 1 (Drosophila) hs
HG-FOCUS:218458_AT germ cell-less homolog 1 (Drosophila) hs
HG-U133A_2:218458_AT germ cell-less homolog 1 (Drosophila) hs
U133_X3P:G11968020_3P_AT germ cell-less homolog 1 (Drosophila) hs
U133_X3P:HS.302032.0.S1_3P_S_AT germ cell-less homolog 1 (Drosophila) hs
U133_X3P:234488_3P_S_AT germ cell-less homolog 1 (Drosophila) hs
HG-U95E:86564_AT germ cell-less homolog 1 (Drosophila) hs
HG-U133_PLUS_2:239355_AT Germ cell-less homolog 1 (Drosophila) hs
HG-U133B:239355_AT Germ cell-less homolog 1 (Drosophila) hs
HG-U95D:82246_AT Germ cell-less homolog 1 (Drosophila) hs
HG-U95E:89144_AT Germ cell-less homolog 1 (Drosophila) hs
HG-U95E:89146_R_AT Germ cell-less homolog 1 (Drosophila) hs
U133_X3P:HS.150627.0.A1_3P_AT Germ cell-less homolog 1 (Drosophila) hs
MOUSE430_2:1438887_A_AT germ cell-less homolog (Drosophila) mm
MOUSE430A_2:1438887_A_AT germ cell-less homolog (Drosophila) mm
MOE430A:1438887_A_AT germ cell-less homolog (Drosophila) mm
MOUSE430A_2:1438888_AT germ cell-less homolog (Drosophila) mm
MOUSE430_2:1438888_AT germ cell-less homolog (Drosophila) mm
MOE430A:1438888_AT germ cell-less homolog (Drosophila) mm
MG-U74BV2:114351_AT germ cell-less homolog (Drosophila) mm
MOE430A:1417114_AT germ cell-less homolog (Drosophila) mm
MOUSE430A_2:1417114_AT germ cell-less homolog (Drosophila) mm
MOUSE430_2:1417114_AT germ cell-less homolog (Drosophila) mm
MOE430A:1417113_AT germ cell-less homolog (Drosophila) mm
MOUSE430A_2:1417113_AT germ cell-less homolog (Drosophila) mm
MOUSE430_2:1417113_AT germ cell-less homolog (Drosophila) mm
MOE430B:1454292_AT germ cell-less homolog (Drosophila) mm
MOUSE430_2:1454292_AT germ cell-less homolog (Drosophila) mm
MOUSE430_2:1432598_AT germ cell-less homolog (Drosophila) mm
MOE430B:1432598_AT germ cell-less homolog (Drosophila) mm
MG-U74AV2:100281_AT Germ cell-less (Gcl) mm
MU11KSUBB:MSA.21594.0_S_AT Germ cell-less (Gcl) mm
MU19KSUBC:TC40449_AT Germ cell-less (Gcl) mm
MU19KSUBC:TC41200_AT Germ cell-less (Gcl) mm
MU19KSUBC:TC41200_G_AT Germ cell-less (Gcl) mm
RG-U34C:RC_AI233279_AT germ cell-less protein rn
RG-U34C:RC_AI100785_AT germ cell-less protein rn
RG-U34C:RC_AI232351_AT germ cell-less protein rn
RAE230A:1375960_AT germ cell-less protein rn
RAT230_2:1375960_AT germ cell-less protein rn
RAE230A:1375380_AT germ cell-less protein rn
RAT230_2:1375380_AT germ cell-less protein rn
RAE230B:1395370_AT germ cell-less protein rn
RAT230_2:1395370_AT germ cell-less protein rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60609 Hypothetical protein Y62E10A.16 [Caenorhabditis elegans] ref|NP_502585.1| GCL (Drosophila germ cell-less) homolog family member (gcl-1) [Caenorhabditis elegans] 0.0
blast CAE58604 Hypothetical protein CBG01771 [Caenorhabditis briggsae] 1.0E-167
blast CAE58604 Hypothetical protein CBG01771 [Caenorhabditis briggsae] 1.0E-147
blast CAE58605 Hypothetical protein CBG01772 [Caenorhabditis briggsae] 2.0E-93
blast NP_001010956 germ cell-less protein isoform 2 [Rattus norvegicus] gb|AAW55670.1| germ cell-less protein short isoform [Rattus norvegicus] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:186938_AT
tcagatgcattaattccgttgtcaattgttgatgaaatgacgtcagcactttggtcatca
cttttagaaaatgaagaaagtccaaaaacacttgaaatggatgatgatgagttttttaaa
cgatgtattaggcttggtagatcattggattcattcccgaaatgctggcgatggatagga
ttcaatttcggagttgatctacttcttcatgtaaacgactattctgtatgtataaaacga
aattgtctcaaccaaaaagctccgtattcggtgaacttaaagtctaaacatgttctacat
taccgactggtcatttgcgactcaaatggtcaaatcctctatgacagtggaaaaaccacg
tgggaaatgaagccagatgaagctagaacaatctatcgaatgagtgaagacttggcaact
cagatatcagttcactttcagtatctgattcatcaaccgatttgtagtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGATGCATTAATTCCGTTGTCAA 281 623 928 Antisense
TCAGCACTTTGGTCATCACTTTTAG 487 609 970 Antisense
GGTAGATCATTGGATTCATTCCCGA 315 505 1063 Antisense
TCATTCCCGAAATGCTGGCGATGGA 587 617 1078 Antisense
GTTGATCTACTTCTTCATGTAAACG 689 435 1120 Antisense
GTCTCAACCAAAAAGCTCCGTATTC 690 467 1172 Antisense
TACCGACTGGTCATTTGCGACTCAA 40 649 1228 Antisense
GCGACTCAAATGGTCAAATCCTCTA 75 289 1244 Antisense
GCAACTCAGATATCAGTTCACTTTC 14 321 1342 Antisense
GTTCACTTTCAGTATCTGATTCATC 236 445 1357 Antisense
GATTCATCAACCGATTTGTAGTACA 164 431 1374 Antisense
Sequence Source Affymetrix Proprietary Database