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[186937_at]

Description ZC168.2 /REP_DB=WormBase Gene ID /WP=CE06568 /TR=SW:Q23247 /GB=CAA94383.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 59.6
(-1.6)
A 		48.7
(-3)
A 		54.2
(-2.3)
A 		95.1
(3)
A 		46
B 70
(2.9)
A 		40.5
(-1.9)
A 		33.8
(-3)
A 		70.9
(3)
A 		37
C 89
(2.2)
A 		81.5
(1.7)
A 		11.1
(-3)
A 		100.3
(3)
P 		89
avr 72.9
(1.3) 		56.9
(-0.4) 		33
(-3) 		88.8
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 99.2
(3)
M 		71.6
(-0.7)
A 		55
(-3)
A 		56.2
(-2.8)
A 		60.8
(-2.2)
A 		58.7
(-2.5)
A 		44
B 140.3
(3)
P 		65.2
(-0.3)
A 		30.4
(-1.9)
A 		5.2
(-3)
A 		60.2
(-0.6)
A 		47.9
(-1.1)
A 		135
C 155.3
(3)
P 		95.9
(-0.1)
A 		59
(-2.1)
A 		41.7
(-3)
A 		58.9
(-2.1)
A 		47
(-2.7)
A 		114
avr 131.6
(3) 		77.6
(-0.3) 		48.1
(-2.2) 		34.4
(-3) 		60
(-1.4) 		51.2
(-2) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 21.7
(3)
A 		10.6
(-3)
A 		14.2
(-1.1)
A 		13.9
(-1.2)
A 		11
B 22.3
(3)
A 		10
(-2.1)
A 		7.8
(-3)
A 		15.1
(0)
A 		15
C 29.5
(3)
A 		23.4
(1.6)
A 		3.9
(-3)
A 		16.9
(0)
P 		26
avr 24.5
(3) 		14.7
(-0.7) 		8.6
(-3) 		15.3
(-0.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 18.3
(-0.2)
M 		25.4
(3)
A 		12
(-3)
A 		14.3
(-2)
A 		18.3
(-0.2)
A 		14.3
(-2)
A 		13
B 48.8
(3)
P 		21.7
(-0.4)
A 		7.4
(-2.2)
A 		1.4
(-3)
A 		24.5
(-0.1)
A 		17.9
(-0.9)
A 		47
C 57.6
(3)
P 		29.2
(-0.5)
A 		15
(-2.2)
A 		8.4
(-3)
A 		19.1
(-1.7)
A 		15.7
(-2.1)
A 		49
avr 41.6
(3) 		25.4
(0.1) 		11.5
(-2.4) 		8
(-3) 		20.6
(-0.8) 		16
(-1.6) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9482
Sequence Type Exemplar sequence
Representative Public ID ZC168.2 NCBI
Target Description ZC168.2 /REP_DB=WormBase Gene ID /WP=CE06568 /TR=SW:Q23247 /GB=CAA94383.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069584 NCBI Caenorhabditis elegans ZC168.2 (ZC168.2) mRNA, complete cds. 11/11 None
SNAP00000040683 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10728544:10728975:1 11/11 None
ZC168.2 ENSEMBL cdna:known chromosome:CEL140:IV:10728544:10728975:1 gene:ZC168.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10728549-10728981(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC168.2
Entrez Gene 191091 Entrez gene
SwissProt Q23247 EMBL-EBI
WormBase CE06568 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5184 neuropeptide hormone activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94383 Hypothetical protein ZC168.2 [Caenorhabditis elegans] ref|NP_501985.1| ZC168.2 [Caenorhabditis elegans] sp|Q23247|YH82_CAEEL Hypothetical protein ZC168.2 in chromosome IV 5.0E-59
blast CAE70857 Hypothetical protein CBG17645 [Caenorhabditis briggsae] 6.0E-39
blast AAA96189 Hypothetical protein C05E11.6 [Caenorhabditis elegans] ref|NP_508782.2| C05E11.6 [Caenorhabditis elegans] 4.0E-11
Sequence
Target Sequence 
>C. ELEGANS:186937_AT
gtcggaccacatcgttgttttttgatttccctcattgtgtacacccttaccgtaaccact
tcatcagctcgattaattctcgaagacacaacagttaggtcagaagaggactcaggtcct
tcatgtccggtgttagctgatgaaccagttggagaagttatggaacgaatttgtgatatg
tgccacgaacttagttcacattcaagacccaatatgagggtggaatgcagagccgactgc
ttcacaacagacgctttccgagagtgcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGACCACATCGTTGTTTTTTGA 152 473 19 Antisense
GTTTTTTGATTTCCCTCATTGTGTA 230 449 35 Antisense
TCATTGTGTACACCCTTACCGTAAC 631 615 50 Antisense
GTAACCACTTCATCAGCTCGATTAA 258 463 70 Antisense
AGAGGACTCAGGTCCTTCATGTCCG 355 67 123 Antisense
CCTTCATGTCCGGTGTTAGCTGATG 472 269 136 Antisense
GATATGTGCCACGAACTTAGTTCAC 543 425 193 Antisense
ACTTAGTTCACATTCAAGACCCAAT 65 101 207 Antisense
GGAATGCAGAGCCGACTGCTTCACA 570 531 240 Antisense
CGACTGCTTCACAACAGACGCTTTC 38 253 252 Antisense
AACAGACGCTTTCCGAGAGTGCCTG 133 137 264 Antisense
Sequence Source Affymetrix Proprietary Database