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[186936_at]

Description W10G11.19 /REP_DB=WormBase Gene ID /WP=CE14834 /TR=O44923 /GB=AAG24224.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 73      6grp_total > 62      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 492.5
(-3)
P 		743.5
(1.6)
P 		820.8
(3)
P 		591
(-1.2)
P 		328
B 517.1
(-2.4)
P 		763.4
(3)
P 		731.3
(2.3)
P 		492.1
(-3)
P 		271
C 487.1
(-3)
P 		795.7
(1.2)
P 		924.7
(3)
P 		569.1
(-1.9)
P 		438
avr 498.9
(-3) 		767.5
(1.9) 		825.6
(3) 		550.7
(-2) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 594.7
(-0.6)
P 		648
(1.8)
P 		590.9
(-0.8)
P 		643.9
(1.6)
P 		674.5
(3)
P 		540.8
(-3)
P 		134
B 507.2
(-3)
P 		592.3
(-0.3)
P 		696.1
(3)
P 		582.4
(-0.6)
P 		576.7
(-0.8)
P 		591.9
(-0.3)
P 		189
C 606.2
(0.6)
P 		611.1
(0.8)
P 		661.5
(3)
P 		636.1
(1.9)
P 		525.9
(-3)
P 		562.4
(-1.4)
P 		136
avr 569.4
(-2.7) 		617.1
(0.7) 		649.5
(3) 		620.8
(1) 		592.4
(-1.1) 		565
(-3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 179.3
(1.3)
P 		161.4
(0.5)
P 		214.6
(3)
P 		86.5
(-3)
P 		128
B 164.9
(1.3)
P 		188.5
(3)
P 		169.5
(1.6)
P 		104.9
(-3)
P 		84
C 161.2
(-1.3)
P 		228.8
(0.5)
P 		322.3
(3)
P 		96
(-3)
P 		226
avr 168.5
(0.1) 		192.9
(1.2) 		235.5
(3) 		95.8
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 109.6
(-3)
P 		230.5
(3)
P 		128.7
(-2.1)
P 		163.3
(-0.3)
P 		203.5
(1.7)
P 		131.7
(-1.9)
P 		121
B 176.5
(-1.3)
P 		197.2
(0.2)
P 		169
(-1.9)
P 		154.3
(-3)
P 		234.3
(3)
P 		220.7
(2)
P 		80
C 224.7
(3)
P 		186.5
(0.6)
P 		168.4
(-0.5)
P 		127.9
(-3)
P 		170.2
(-0.4)
P 		188.3
(0.7)
P 		97
avr 170.3
(-0.7) 		204.7
(3) 		155.4
(-2.3) 		148.5
(-3) 		202.7
(2.8) 		180.2
(0.4) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5906
Sequence Type Exemplar sequence
Representative Public ID W10G11.19 NCBI
Target Description W10G11.19 /REP_DB=WormBase Gene ID /WP=CE14834 /TR=O44923 /GB=AAG24224.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062172
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000013254 ENSEMBL cdna:SNAP chromosome:CEL140:II:3553830:3554541:1 11/11 None
GENEFINDER00000013273 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3553830:3554541:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062172 8/11 Cross Hyb Matching Probes None
W10G11.20 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3551697-3554540(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D88104 protein W10G11.19 [imported] - Caenorhabditis elegans 2.0E-76
blast CAE73808 Hypothetical protein CBG21358 [Caenorhabditis briggsae] 5.0E-66
blast AAK82923 Hypothetical protein W10G11.20 [Caenorhabditis elegans] ref|NP_494573.1| W10G11.20 [Caenorhabditis elegans] 1.0E-62
Sequence
Target Sequence 
>C. ELEGANS:186936_AT
atcaattccctctcaaatcgaggctcttcaatccaaattacgagatgattgtaaggcgaa
tctgctaatgtcgattcccattcaaaagctggagcatttgagcaaaatcgccacggaaac
atccggcccatatggatcgctgactgacaaaatagagtctgtaaaatacgcggaaaagct
gatcaatgaacgagcggaacggattaaacaattttcagatgctcttgagccctgcctcga
ccaggagctcttctcaaaagtggctgcacttcaaccggagcttgacgctgaaatcgaaaa
atacgagaaggccctggaggactggaccaaaacctacggagaattccagacacttgtcgc
cgagcggtcaatgatcaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATTCCCTCTCAAATCGAGGCT 415 25 966 Antisense
AAATCGAGGCTCTTCAATCCAAATT 276 117 980 Antisense
AATCTGCTAATGTCGATTCCCATTC 521 169 1024 Antisense
GAGCAAAATCGCCACGGAAACATCC 34 391 1065 Antisense
GAAACATCCGGCCCATATGGATCGC 185 357 1081 Antisense
TTTTCAGATGCTCTTGAGCCCTGCC 524 675 1177 Antisense
CTCGACCAGGAGCTCTTCTCAAAAG 186 233 1201 Antisense
CACTTCAACCGGAGCTTGACGCTGA 120 197 1232 Antisense
CGAGAAGGCCCTGGAGGACTGGACC 223 251 1269 Antisense
GAGAATTCCAGACACTTGTCGCCGA 375 391 1304 Antisense
GTCGCCGAGCGGTCAATGATCAACC 500 475 1321 Antisense
Sequence Source Affymetrix Proprietary Database