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[186935_at]

Description ZK507.4 /REP_DB=WormBase Gene ID /WP=CE00404 /TR=SW:P34636 /GB=CAA82370.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 62      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 152.6
(2.8)
A 		113.9
(0.1)
A 		154.7
(3)
A 		71.7
(-3)
A 		83
B 218.5
(3)
A 		124.7
(0.3)
A 		92.3
(-0.6)
A 		8.6
(-3)
A 		210
C 183.1
(3)
P 		168.4
(0.6)
A 		162.6
(-0.4)
A 		146.8
(-3)
P 		36
avr 184.7
(3) 		135.7
(0.3) 		136.5
(0.3) 		75.7
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 116.2
(-1.7)
A 		192.9
(0.2)
P 		201.9
(0.4)
P 		304.4
(3)
P 		190
(0.1)
P 		66.3
(-3)
A 		238
B 134.2
(0.3)
A 		208.6
(3)
P 		209
(3)
P 		184.6
(2.1)
P 		192.6
(2.4)
P 		43.9
(-3)
A 		165
C 135.3
(1)
A 		87
(-1)
P 		122
(0.4)
A 		151.8
(1.6)
P 		185.2
(3)
M 		39.1
(-3)
A 		146
avr 128.6
(-0.1) 		162.8
(1.1) 		177.6
(1.7) 		213.6
(3) 		189.3
(2.1) 		49.8
(-3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 55.6
(3)
A 		24.7
(-1.1)
A 		40.4
(1)
A 		10.5
(-3)
A 		45
B 69.7
(3)
A 		30.8
(-0.4)
A 		21.4
(-1.3)
A 		1.8
(-3)
A 		68
C 60.6
(3)
P 		48.4
(1)
A 		56.7
(2.3)
A 		24.7
(-3)
P 		36
avr 62
(3) 		34.6
(-0.3) 		39.5
(0.3) 		12.3
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 21.4
(-2.5)
A 		68.6
(2.2)
P 		44
(-0.3)
P 		77.2
(3)
P 		57.3
(1)
P 		16.1
(-3)
A 		61
B 46.7
(-0.1)
A 		69.4
(2.1)
P 		50.7
(0.3)
P 		48.9
(0.2)
P 		78.2
(3)
P 		16.4
(-3)
A 		62
C 50.1
(1.7)
A 		26.5
(-1.3)
P 		31
(-0.7)
A 		30.5
(-0.8)
P 		59.9
(3)
M 		13.1
(-3)
A 		47
avr 39.4
(-0.1) 		54.8
(1.8) 		41.9
(0.2) 		52.2
(1.4) 		65.1
(3) 		15.2
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6790
Sequence Type Exemplar sequence
Representative Public ID ZK507.4 NCBI
Target Description ZK507.4 /REP_DB=WormBase Gene ID /WP=CE00404 /TR=SW:P34636 /GB=CAA82370.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066616
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK507.4 ENSEMBL cdna:known chromosome:CEL140:III:9103984:9105854:1 gene:ZK507.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066616 7/11 Cross Hyb Matching Probes None
SNAP00000005918 5/11 Cross Hyb Matching Probes None
GENEFINDER00000005930 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9103979-9105850(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK507.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P34636 Hypothetical protein ZK507.4 in chromosome III 1.0E-120
blast CAA82370 Hypothetical protein ZK507.4 [Caenorhabditis elegans] ref|NP_499017.2| ZK507.4 [Caenorhabditis elegans] 1.0E-94
blast CAE62766 Hypothetical protein CBG06935 [Caenorhabditis briggsae] 4.0E-63
Sequence
Target Sequence 
>C. ELEGANS:186935_AT
tcccaccattcagaacccaggttacgaacttcgaacctagacgttggcgagtattgtgca
acgtttcacgagaattatgtgtattattgtcgtggtatctggacagcagagaagcttctt
gaacatcgtagtatcatgaaaaagattggaaagttttgtccgagttacaaatcagcatgt
gtcacgagaacaagaattgacccagaagaggaaagagaacgaaaagaagatcataaaaaa
gaattgacagatgatgttggggatatggcattcgatgatctcatgagaaagcttgaaaag
atagttccatgtcgtccaaactgcaatgtttcagttcatccgcactgtactcgtcagtgt
aagtgtgaatacgaataccatcggatgcaaaaatggtgtaaaccgccacgaattgaagag
agattcaaatacttttgcaggtataacatcttttccaatttttctttaaacccatctcta
tcattatcatcttatgactttgaaagattgggaagagaaaacgaaagaaatcgcaaaaga
cgcaccccaatctttcaaagtcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCACCATTCAGAACCCAGGTTAC 261 597 91 Antisense
CGAACTTCGAACCTAGACGTTGGCG 154 253 115 Antisense
GGCGAGTATTGTGCAACGTTTCACG 442 541 136 Antisense
GAAGCTTCTTGAACATCGTAGTATC 670 341 201 Antisense
GGGATATGGCATTCGATGATCTCAT 298 495 350 Antisense
AAAAGATAGTTCCATGTCGTCCAAA 590 131 386 Antisense
TTTCAGTTCATCCGCACTGTACTCG 212 673 419 Antisense
GTATAACATCTTTTCCAATTTTTCT 57 455 531 Antisense
AAACCCATCTCTATCATTATCATCT 240 127 558 Antisense
AGAAATCGCAAAAGACGCACCCCAA 427 71 616 Antisense
CGCACCCCAATCTTTCAAAGTCTTT 269 255 631 Antisense
Sequence Source Affymetrix Proprietary Database